Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0391.Seq
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0100 - 791425-792996                                             27   4.1  
11_01_0438 - 3349506-3351239                                           26   9.5  
05_01_0327 - 2565574-2565654,2566037-2566099,2566511-2566591,256...    26   9.5  

>03_01_0100 - 791425-792996
          Length = 523

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 301 SGRAVVPKFIMKRNTPAAGETGPWASLSGR 390
           SG A  P+   +RNT  +G  GPW   + R
Sbjct: 421 SGAAAAPRPPHRRNTSWSGAGGPWEEQAAR 450


>11_01_0438 - 3349506-3351239
          Length = 577

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -1

Query: 395 PLRPDNEAHGPV----SPAAGVFRFIINFGTTALPDGTFG 288
           PLRPD+ +H  V        G +R  +  GT A  D T G
Sbjct: 292 PLRPDSPSHAEVLVCGGAPRGAYRLALRNGTFAPADRTCG 331


>05_01_0327 -
           2565574-2565654,2566037-2566099,2566511-2566591,
           2566710-2566787,2566892-2566984,2567108-2567225,
           2567568-2567695,2567808-2568083,2568763-2568917,
           2568997-2569140,2569427-2569844
          Length = 544

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -3

Query: 243 SITTRIRYIPSNIVTRYLNKLFPKV*YE*RPH 148
           +++TR  +IPSNI+ + L +L+ K  Y  RPH
Sbjct: 350 NLSTRGSFIPSNILLKCL-QLWKKFHYIPRPH 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,713,963
Number of Sequences: 37544
Number of extensions: 129484
Number of successful extensions: 288
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)