Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0391.Seq
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55877| Best HMM Match : RYDR_ITPR (HMM E-Value=1.8)                 27   5.6  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         27   5.6  
SB_29641| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)          26   9.8  
SB_44811| Best HMM Match : Toxin_33 (HMM E-Value=8.1)                  26   9.8  

>SB_55877| Best HMM Match : RYDR_ITPR (HMM E-Value=1.8)
          Length = 515

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 9   CFKLYFEHVNIFSSSERYEQITSSFSIYTRNIL 107
           CF    E ++I  SSE   ++ SS ++Y  ++L
Sbjct: 347 CFGHLCEEIDIVQSSENLNELNSSSNLYVLSVL 379


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 282  IYIHKXVSVRLITSITTRIRYI 217
            I IH+ ++ R +T +T+RIR++
Sbjct: 2327 ISIHRGITTRTLTRVTSRIRFL 2348


>SB_29641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 3   YFCFKLYFEHVNIFSSSERYEQITSSFSI 89
           Y+C  LYF   ++F+   R+E +   F++
Sbjct: 209 YYCGILYFTGSDVFNKQMRHEALEKGFTL 237


>SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)
          Length = 265

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 319 PKFIMKRNTPAAGETGPWASLSGRNG 396
           P F    N PA G  G WA  + R G
Sbjct: 129 PHFGRLNNQPAVGHVGVWAPSNSRKG 154


>SB_44811| Best HMM Match : Toxin_33 (HMM E-Value=8.1)
          Length = 142

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 298 PSGRAVVPKFIMKRNTPAAGETGPWA 375
           P G+ VVP  +M R TP       WA
Sbjct: 37  PDGKPVVPPALMNRPTPGERRFAYWA 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,339,034
Number of Sequences: 59808
Number of extensions: 161368
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)