Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0391.Seq
         (398 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...    24   2.4  
AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical prote...    22   7.2  
AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical prote...    22   7.2  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 233 LEFDTSPRILLRVT*ISFSLKFSMNDDHTC 144
           ++  T+   +LRV  I F++K SM+   TC
Sbjct: 128 VDVKTTDGFMLRVFCIGFTIKDSMSQRKTC 157


>AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 397 HRCGRTMRPTGPSRRQ 350
           HRCGRT      +RR+
Sbjct: 179 HRCGRTESDNAKTRRR 194


>AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 397 HRCGRTMRPTGPSRRQ 350
           HRCGRT      +RR+
Sbjct: 179 HRCGRTESDNAKTRRR 194


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,695
Number of Sequences: 2352
Number of extensions: 5523
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31639662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)