Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0391.Seq
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-7|AAC69111.3|  744|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    27   6.5  
AF067622-5|AAC17544.1|  371|Caenorhabditis elegans Nuclear hormo...    27   6.5  

>U53341-7|AAC69111.3|  744|Caenorhabditis elegans Hypothetical
           protein F49E10.1 protein.
          Length = 744

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 3   YFCFKLYFEHVNIFSSSERYEQITSSFSIYTRNILTL 113
           YFCFK + +     S+ +  E +  +   Y RN+L +
Sbjct: 555 YFCFKNFMQQTVFSSTPQGNENLMETNLTYLRNMLRM 591


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 20  LFRTCKYF*FLRTLRTNYFVVFNLHKKYFNFNK 118
           L R    F  +  L+ NYFV++ ++  +F+ NK
Sbjct: 211 LGRIMNVFFVIEILQINYFVIYCIYNLFFSSNK 243


>AF067622-5|AAC17544.1|  371|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 15 protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 345 RVSFHNKFWDHCPS*RYFWNYIYIHKXV-SVRLITSITTRIRYI-PSNIVTRYLNKL 181
           R+++H K+WD C   + F N     K   + R    +   ++YI P  +    LN++
Sbjct: 64  RITYHCKYWDRCYDGQEFVNVKKFSKRCRACRYQRCLQVGMKYICPGKLELELLNRV 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,790,934
Number of Sequences: 27780
Number of extensions: 120183
Number of successful extensions: 251
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)