Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0389.Seq
         (413 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   5e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 80   6e-16
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              70   7e-13
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           60   5e-10
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.093
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.12 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.16 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   0.87 
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   0.87 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               28   2.6  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              28   2.6  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   6.1  
SB_17295| Best HMM Match : Cu2_monooxygen (HMM E-Value=0.00028)        27   6.1  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  27   6.1  
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)          27   8.1  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 5e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 80.2 bits (189), Expect = 6e-16
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
           TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24  TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +1

Query: 187 MGKGSFKYAWVLDKLKAERERGI 255
           MGKGSFKYAWVLDKLKAERERGI
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGI 23


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 70.1 bits (164), Expect = 7e-13
 Identities = 29/52 (55%), Positives = 41/52 (78%)
 Frame = +3

Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFD 413
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEF+
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFE 52


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 60.5 bits (140), Expect = 5e-10
 Identities = 23/53 (43%), Positives = 38/53 (71%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFD 413
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEF+
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFE 261



 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 18/42 (42%), Positives = 30/42 (71%)
 Frame = +1

Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERG 252
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG 207


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 33.1 bits (72), Expect = 0.093
 Identities = 24/63 (38%), Positives = 29/63 (46%)
 Frame = +1

Query: 67   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 247  RGI 255
            RGI
Sbjct: 1987 RGI 1989


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115



 Score = 26.6 bits (56), Expect = 8.1
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 76  VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 255
           +I H D+GK+T T  L+   G I         +EA  +     K     D ++ ER+RGI
Sbjct: 15  IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 58  THINIVVIGHVDSGKSTTTGHLIY 129
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 395
           T  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 309 IDAPGHRDFIKNMITGTSQADCAVLIVA 392
           +D PGH   +  M+ G +  D A+L++A
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 40  KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 213
           K+ +   + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87


>SB_17295| Best HMM Match : Cu2_monooxygen (HMM E-Value=0.00028)
          Length = 616

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -1

Query: 338 DEISVSRSINDGNIVLASFELPESNIDCIPRSRSAFSLSNTQ-AYLKDPLPISWASFSNF 162
           D  S S S N  ++ + +     +NID + R   + S SN   A  + P P       NF
Sbjct: 334 DNFSNSPSSNRNSLYIRN-TTNSNNIDNLTRQMGSSSESNNLVAQNRSPFPHPVKKAPNF 392

Query: 161 SMVRLSIPPH 132
           S++   +P H
Sbjct: 393 SVIEKIVPGH 402


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 64  INIVVIGHVDSGKSTTTGHLIY 129
           + + V+G+VD+GKST  G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251


>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
          Length = 663

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 160 EKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
           +++ K  +EM   + K  W  +KLKAE E
Sbjct: 42  KEYSKLKEEMNSDAVKVKWAQNKLKAELE 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,224
Number of Sequences: 59808
Number of extensions: 240425
Number of successful extensions: 659
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)