Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0388.Seq
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    26   2.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   3.5  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   6.1  
SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.1  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    24   8.0  

>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 307 KQIHIDFIKLSCSYINERTSRVLKHNIEEQ*NNLRPFRNHVLK 179
           K+  +   KLS ++ N +T+ +  HN EE+   +R  R+H L+
Sbjct: 262 KEKEVSLYKLSINH-NNKTTLLAVHNSEERDYMVRQARHHQLQ 303


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -1

Query: 226  EEQ*NNLRPFRNHVLKVYYVLGRSVLYLFWLRIF 125
            +EQ N+ +PF+++++++Y +      Y FW + F
Sbjct: 4026 DEQGNSRKPFKDYIIQLYSL---KYDYDFWFKYF 4056


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 211 YFIALQYYALAPWKYVH*CKNMII 282
           +F ALQ+++ +  +Y H C+  +I
Sbjct: 276 HFFALQFFSTSLIQYTHICRKCVI 299


>SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 211 YFIALQYYALAPWKY 255
           YF++LQ Y L  W+Y
Sbjct: 15  YFLSLQSYVLVNWQY 29


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 199 KDASYFIALQYYALAPWKYVH*CKNM 276
           +D  +F   QY+A+A  KYV+   NM
Sbjct: 146 RDVKWFHNHQYFAVAQKKYVYVYDNM 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,283,534
Number of Sequences: 5004
Number of extensions: 20810
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)