Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0388.Seq
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   3.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.2  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 157 NDLVRSILLKHDFEKDASYFIALQYY 234
           +D+ R  LL +DF KD+S+ I   ++
Sbjct: 328 SDVFRYGLLIYDFFKDSSFRIQHHFF 353


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 259 ERTSRVLKHNIEEQ*NNLRPFRN 191
           E T ++  H+I E  N +R FR+
Sbjct: 250 EYTLKIYTHDIPETYNVVRKFRD 272


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 259 ERTSRVLKHNIEEQ*NNLRPFRN 191
           E T ++  H+I E  N +R FR+
Sbjct: 250 EYTLKIYTHDIPETYNVVRKFRD 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,946
Number of Sequences: 438
Number of extensions: 1351
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)