Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0388.Seq
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29920.1 68417.m04257 heat shock protein-related contains sim...    27   4.9  
At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase fam...    26   8.6  
At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase fam...    26   8.6  
At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase fa...    26   8.6  

>At4g29920.1 68417.m04257 heat shock protein-related contains
           similarity to heat shock protein 101 [Triticum aestivum]
           gi|6013196|gb|AAF01280
          Length = 1017

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 190 DFEKDASYFIALQYYALAPWKYVH*CKNMI 279
           ++EK+A  FI+ Q+  L PW   H   N I
Sbjct: 482 NYEKEAKAFISAQHKILPPWLQPHGDNNNI 511


>At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family; contains non-consensus CA
           donor splice site at exon 1 and TA acceptor splice site
           at exon 2
          Length = 445

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 170 RTRSFRFVFILVKDLYLYLSGHHV 99
           +TRSF+FV  LV+ L   + G HV
Sbjct: 325 QTRSFQFVSDLVEGLMRLMEGEHV 348


>At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family; contains non-consensus AT
           donor splice site at exon 1 and  non-consensus AC
           acceptor splice site at exon 2
          Length = 443

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 170 RTRSFRFVFILVKDLYLYLSGHHV 99
           +TRSF+FV  LV+ L   + G HV
Sbjct: 327 QTRSFQFVSDLVEGLMRLMEGEHV 350


>At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1)  from {Mus
           musculus} SP|P98200, {Bos taurus} SP|Q29449, {Homo
           sapiens} SP|O43520; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1200

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 202 PFRNHVLKVYYVLGRSVLYLFWLRIFIYI*VDITLV*VQFFSRDQNH 62
           P R  V  +Y+ L   +LY +++ I +Y+ ++I  V    F     H
Sbjct: 354 PKRAPVAAIYHFLTAVMLYSYFIPISLYVSIEIVKVLQSIFINQDIH 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,258,015
Number of Sequences: 28952
Number of extensions: 94015
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)