Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0387.Seq
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   1.1  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   1.1  
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382...    29   1.1  
06_01_0092 - 775290-775691                                             28   3.3  
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114...    27   4.4  

>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 122 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 220
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 431


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 122 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 220
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 436


>04_04_1183 - 31537196-31537290,31537665-31537986,31538176-31538277,
            31538826-31539071,31539385-31539506,31539588-31540344,
            31540447-31540770,31540872-31541052,31541208-31541602,
            31541877-31541942,31542225-31542377,31542593-31542691,
            31542776-31542982,31543432-31543572,31543852-31544019,
            31544302-31544395,31544479-31544585,31545140-31545274,
            31545549-31545656,31545975-31546049,31546197-31546262,
            31546500-31546556,31546678-31546702,31546809-31546889,
            31546966-31547080,31547211-31547370,31547444-31547483,
            31547599-31547780,31547905-31548234
          Length = 1650

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -2

Query: 358  HSTLSRSILLIYKGFCRFRPIG*KMS*FNKNLTRI*QNINAYNLPFAIQAAQLLGRAIGA 179
            H  + RSIL     F    P+G  ++ F+K+L  I +N+  +   F  Q +QLL   +  
Sbjct: 1018 HDAMLRSILRAPMVFFHTNPLGRIINRFSKDLGDIDRNVAIFVNMFMAQISQLLSTFVLI 1077

Query: 178  GL 173
            G+
Sbjct: 1078 GI 1079


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 180 RASSLLRQLAKGGCAARR 127
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>08_02_1023 -
           23710825-23710950,23711037-23711120,23711367-23711492,
           23711593-23711712,23712046-23712153,23712243-23712395,
           23712505-23712600,23712716-23712800,23713278-23714268,
           23714870-23714915,23715806-23715964,23716516-23716651,
           23716734-23716900,23717366-23717696,23717827-23718062,
           23718326-23718514
          Length = 1050

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 65  QFTGRRFTT-S*RENPGVTQLNRLAAHPPFASWRNSEEART 184
           + +G  FT+ S R  PGV+   +   + PF+S R++  AR+
Sbjct: 356 EVSGASFTSYSIRSGPGVSMYEQCVGNGPFSSTRHARLARS 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,544,415
Number of Sequences: 37544
Number of extensions: 230870
Number of successful extensions: 613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)