Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0387.Seq
         (410 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456795-1|CAG33076.1|  533|Homo sapiens PHGDH protein.                29   7.9  
BC032110-1|AAH32110.3|  322|Homo sapiens PHGDH protein protein.        29   7.9  
BC011262-1|AAH11262.1|  533|Homo sapiens phosphoglycerate dehydr...    29   7.9  
BC001349-1|AAH01349.1|  533|Homo sapiens phosphoglycerate dehydr...    29   7.9  
BC000303-1|AAH00303.1|  533|Homo sapiens phosphoglycerate dehydr...    29   7.9  
AL589734-3|CAI22409.1|  499|Homo sapiens phosphoglycerate dehydr...    29   7.9  
AL589734-1|CAI22407.1|  533|Homo sapiens phosphoglycerate dehydr...    29   7.9  
AL392105-1|CAH71210.1|  600|Homo sapiens G protein-coupled recep...    29   7.9  
AL360004-2|CAI16953.1|  600|Homo sapiens G protein-coupled recep...    29   7.9  
AL139251-2|CAI22213.1|  499|Homo sapiens phosphoglycerate dehydr...    29   7.9  
AL139251-1|CAI22212.1|  533|Homo sapiens phosphoglycerate dehydr...    29   7.9  
AL136141-4|CAI12152.1|  600|Homo sapiens G protein-coupled recep...    29   7.9  
AF208736-1|AAK60577.1|   49|Homo sapiens 3-phosphoglycerate dehy...    29   7.9  
AF171237-1|AAD51415.1|  533|Homo sapiens 3-phosphoglycerate dehy...    29   7.9  
AF171236-1|AAD51414.1|  405|Homo sapiens 3-phosphoglycerate dehy...    29   7.9  
AF006043-1|AAB88664.1|  533|Homo sapiens 3-phosphoglycerate dehy...    29   7.9  
AB046844-1|BAB13450.1|  599|Homo sapiens KIAA1624 protein protein.     29   7.9  

>CR456795-1|CAG33076.1|  533|Homo sapiens PHGDH protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 263


>BC032110-1|AAH32110.3|  322|Homo sapiens PHGDH protein protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 10  TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 52


>BC011262-1|AAH11262.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 263


>BC001349-1|AAH01349.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 263


>BC000303-1|AAH00303.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 263


>AL589734-3|CAI22409.1|  499|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 187 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 229


>AL589734-1|CAI22407.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 263


>AL392105-1|CAH71210.1|  600|Homo sapiens G protein-coupled receptor
           107 protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 230 FAIRH--SGCATVGKGDRCGPLRYYASWRKGDVLQ 132
           ++IRH     AT GKGD  GPL+  A+ R G  ++
Sbjct: 421 WSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIE 455


>AL360004-2|CAI16953.1|  600|Homo sapiens G protein-coupled receptor
           107 protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 230 FAIRH--SGCATVGKGDRCGPLRYYASWRKGDVLQ 132
           ++IRH     AT GKGD  GPL+  A+ R G  ++
Sbjct: 421 WSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIE 455


>AL139251-2|CAI22213.1|  499|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 187 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 229


>AL139251-1|CAI22212.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 263


>AL136141-4|CAI12152.1|  600|Homo sapiens G protein-coupled receptor
           107 protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 230 FAIRH--SGCATVGKGDRCGPLRYYASWRKGDVLQ 132
           ++IRH     AT GKGD  GPL+  A+ R G  ++
Sbjct: 421 WSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIE 455


>AF208736-1|AAK60577.1|   49|Homo sapiens 3-phosphoglycerate
           dehydrogenase protein.
          Length = 49

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 6   TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 48


>AF171237-1|AAD51415.1|  533|Homo sapiens 3-phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 263


>AF171236-1|AAD51414.1|  405|Homo sapiens 3-phosphoglycerate
           dehydrogenase protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 93  TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 135


>AF006043-1|AAB88664.1|  533|Homo sapiens 3-phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 240 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 112
           T   C    R+ NC  G  V   +LLR L  G CA   L   T
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT 263


>AB046844-1|BAB13450.1|  599|Homo sapiens KIAA1624 protein protein.
          Length = 599

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 230 FAIRH--SGCATVGKGDRCGPLRYYASWRKGDVLQ 132
           ++IRH     AT GKGD  GPL+  A+ R G  ++
Sbjct: 420 WSIRHLQEASATDGKGDSMGPLQQRANLRAGSRIE 454


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,654,835
Number of Sequences: 237096
Number of extensions: 1290415
Number of successful extensions: 2304
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2304
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)