Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0387.Seq
(410 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z81594-1|CAB04745.1| 908|Caenorhabditis elegans Hypothetical pr... 28 3.0
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 27 5.3
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 27 5.3
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 27 5.3
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 27 5.3
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 27 5.3
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 27 5.3
Z49913-6|CAA90145.2| 460|Caenorhabditis elegans Hypothetical pr... 26 9.2
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 26 9.2
>Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical
protein F38A6.2 protein.
Length = 891
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 229 LPFAIQAAQLLGRAIGAGLFAITPAGE--RGMCCKAIKLGNARV 104
L F+ + L G++IGA L T AGE G K +K G++RV
Sbjct: 761 LDFSSDSQYLRGQSIGAHLLFWTKAGEICDGTSVKDVKWGSSRV 804
>Z81594-1|CAB04745.1| 908|Caenorhabditis elegans Hypothetical
protein T20F10.1 protein.
Length = 908
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 96 HDVVKRRPVNCNTTHYRANWV--PGPPSRSTVSI 1
H VVK P N ++ N P PP++ST+SI
Sbjct: 247 HPVVKAPPPNPTMLNHNKNMAPPPPPPAKSTISI 280
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 223 FAIQAAQLLGRAIGAGLFAITPAGE 149
++++A+ LLG AI + +TPAG+
Sbjct: 895 YSVRASNLLGEAIRQCVITVTPAGQ 919
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform b
protein.
Length = 4203
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 223 FAIQAAQLLGRAIGAGLFAITPAGE 149
++++A+ LLG AI + +TPAG+
Sbjct: 812 YSVRASNLLGEAIRQCVITVTPAGQ 836
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 223 FAIQAAQLLGRAIGAGLFAITPAGE 149
++++A+ LLG AI + +TPAG+
Sbjct: 1133 YSVRASNLLGEAIRQCVITVTPAGQ 1157
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 223 FAIQAAQLLGRAIGAGLFAITPAGE 149
++++A+ LLG AI + +TPAG+
Sbjct: 1133 YSVRASNLLGEAIRQCVITVTPAGQ 1157
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 223 FAIQAAQLLGRAIGAGLFAITPAGE 149
++++A+ LLG AI + +TPAG+
Sbjct: 1133 YSVRASNLLGEAIRQCVITVTPAGQ 1157
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 223 FAIQAAQLLGRAIGAGLFAITPAGE 149
++++A+ LLG AI + +TPAG+
Sbjct: 812 YSVRASNLLGEAIRQCVITVTPAGQ 836
>Z49913-6|CAA90145.2| 460|Caenorhabditis elegans Hypothetical
protein ZK938.6 protein.
Length = 460
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 153 AKGGCAARRLSWVTPGFSRHDVVKRRPVNCNTTHYRANWVPGPPSR 16
AKGG A R W + D+ + N T Y W+PGPP+R
Sbjct: 358 AKGGFAVR---WRELLQQKWDMSNIKFHNLTKTSYM--WIPGPPTR 398
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 141 IPLSPAGVIAKRPAPIALPNS 203
IP++PA V+A R P ALP S
Sbjct: 145 IPVAPAPVVAGRLIPQALPGS 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,561,519
Number of Sequences: 27780
Number of extensions: 191842
Number of successful extensions: 392
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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