Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0387.Seq
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r...    27   4.9  
At1g73290.1 68414.m08481 serine carboxypeptidase S10 family prot...    27   4.9  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    27   6.5  
At3g27530.1 68416.m03441 vesicle tethering family protein contai...    27   6.5  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   6.5  

>At3g54430.1 68416.m06021 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 183

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 84  KRRPVNCNTTHYRANWVPGPPSRSTVS 4
           K R  NC  TH ++ W+P   +RS+ S
Sbjct: 62  KSRGYNC-VTHVKSTWIPSSATRSSSS 87


>At1g73290.1 68414.m08481 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P07519) [Hordeum vulgare]; glucose acyltransferase
           GB:AAD01263 [Solanum berthaultii]; contains Pfam
           profile: PF00450 Serine carboxypeptidase;
          Length = 438

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 386 SGLLFQTGTTLNPISVYSFDL*GILPISAYWLK 288
           SGLLF+ G     + VY+  L  ++P +  W K
Sbjct: 91  SGLLFENGPLAMKLDVYNGTLPSLVPTTYSWTK 123


>At5g24280.1 68418.m02856 expressed protein ; expression supported
           by MPSS
          Length = 1634

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 388 IVDSCSKLEQHSTLSRSILLIYKGFC 311
           I+D  SKLE  S+LS  I +I  G C
Sbjct: 691 IIDGISKLEVQSSLSLPITIIDSGKC 716


>At3g27530.1 68416.m03441 vesicle tethering family protein contains
           Pfam PF04869: Uso1 / p115 like vesicle tethering
           protein, head region and PF04871: Uso1 / p115 like
           vesicle tethering protein, C terminal region
          Length = 914

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -2

Query: 196 GRAIGAGLFAITPAGERGMCCKAIKLGNARVFPSRRCKTTASEL*YDSL*GELGTGPPL 20
           G  +  GL +    G+   CC+A  + +  V  + RCK  A ++  +S    +GT  PL
Sbjct: 436 GSMLLRGLCSGEADGDLETCCRAASILSHVVKDNLRCKEKALKIVLESPMPSMGTPEPL 494


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 327  IKRIDRDRVECCSSLEQESTIKERGLQR 410
            ++ +  + VE C +LE  ST+K+R +++
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQ 1367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,085,777
Number of Sequences: 28952
Number of extensions: 176727
Number of successful extensions: 446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)