Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0386.Seq
         (403 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.28 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.28 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   6.0  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    20   7.9  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    20   7.9  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 306 HRRHSFFKEVPEVFNKTLPQEEQF 377
           HRR +F KEV + F +TL +  QF
Sbjct: 268 HRRDAFLKEVAD-FQETLKKISQF 290


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 306 HRRHSFFKEVPEVFNKTLPQEEQF 377
           HRR +F KEV + F +TL +  QF
Sbjct: 268 HRRDAFLKEVAD-FQETLKKISQF 290


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 303 YHRRHSFFKEVPEVFNKTLPQ 365
           ++R HS+  ++ + +  TLP+
Sbjct: 399 FYRWHSYIDDIFQEYKATLPR 419


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 271 RDCLGYCFAL 242
           ++CL YCF L
Sbjct: 281 KNCLSYCFNL 290


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 271 RDCLGYCFAL 242
           ++CL YCF L
Sbjct: 281 KNCLSYCFNL 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,139
Number of Sequences: 336
Number of extensions: 1573
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)