Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0386.Seq
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       44   3e-05
07_03_1662 + 28447419-28447666,28448429-28448573                       43   8e-05
09_02_0195 + 5643549-5645090                                           31   0.45 
09_04_0430 + 17502387-17503505                                         28   3.2  
08_02_1012 + 23550314-23551504                                         28   3.2  
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473...    27   5.6  
10_06_0188 - 11603941-11604528                                         26   9.7  
07_03_1296 + 25583195-25584385                                         26   9.7  

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 22/53 (41%), Positives = 27/53 (50%)
 Frame = +1

Query: 244 GQNNNLSNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVA 402
           G+  NL   V V+RDKTKV +T+D PFS                  DWLRV+A
Sbjct: 55  GKAGNLGESVTVSRDKTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIA 107



 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +2

Query: 146 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEG 247
           ++ F IDC  P +D I+++ + EK+L+E +KV G
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAG 54


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +2

Query: 146 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEG 247
           ++ F IDC+ P ED I+++ + EK+L+E +KV G
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAG 53



 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = +1

Query: 244 GQNNNLSNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVA 402
           G+  NL + V V RDKTKV +T+D  FS                  DWLRV+A
Sbjct: 54  GKAGNLGDSVTVTRDKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIA 106


>09_02_0195 + 5643549-5645090
          Length = 513

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 117 ILPPFTPFLPVFWCNWAFLAT 55
           ILPP  P LP+ W +W  LAT
Sbjct: 152 ILPPSNPTLPMQWIDWEALAT 172


>09_04_0430 + 17502387-17503505
          Length = 372

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 111 PPFTPFLPVFWCNWAFLATGF 49
           PP  P   +++C W F   GF
Sbjct: 270 PPIVPGTDMYYCTWGFFPVGF 290


>08_02_1012 + 23550314-23551504
          Length = 396

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 111 PPFTPFLPVFWCNWAFLATGF 49
           PP  P   +++C+W F   GF
Sbjct: 264 PPIVPGTDMYYCSWGFFPMGF 284


>06_03_0576 -
           22443668-22444146,22446239-22446393,22447251-22447331,
           22448475-22448618,22449670-22449695,22449748-22449811,
           22449905-22449996,22450550-22450780,22451238-22451678,
           22451754-22452293
          Length = 750

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 318 NVCGDSDFRLIPGDDNVIA*VIVLPSTLTCSFKYFS 211
           N   D D RL+  DD V +   VLP    CS   F+
Sbjct: 666 NAARDCDLRLLRSDDYVASLPAVLPELWICSLCRFN 701


>10_06_0188 - 11603941-11604528
          Length = 195

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 111 PPFTPFLPVFWCNWAFLATG 52
           PP  P   +++C WAF   G
Sbjct: 57  PPIVPGTDMYFCTWAFFPLG 76


>07_03_1296 + 25583195-25584385
          Length = 396

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 111 PPFTPFLPVFWCNWAFLATGF 49
           PP  P   +++C W F   GF
Sbjct: 193 PPIVPGTDMYYCAWGFYPMGF 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,868,425
Number of Sequences: 37544
Number of extensions: 173410
Number of successful extensions: 484
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)