Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0386.Seq
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    44   4e-05
AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    31   0.41 
Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical pr...    28   2.2  
U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal prote...    27   5.0  
Z22176-7|CAA80137.1|  910|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AC024817-10|AAK68523.1|  188|Caenorhabditis elegans Hypothetical...    26   8.8  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = +2

Query: 146 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKT 253
           +LKF ++C +P ED IL + + E +L E +KV GKT
Sbjct: 20  HLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKT 55


>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 286 PWRRQRDCLGYCFALNFDVFLQVFLEVTYV*DTILSGMRAVD 161
           PW R RD L     + FD+ L   LEV Y  D ILS    ++
Sbjct: 7   PWDRFRDWLHCICVVTFDLELGQALEVIYPGDAILSNTEKIN 48


>Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical
           protein T09E11.5 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 114 LPPFTPFLPVFWCNWAFLATGFFVTAIVAN 25
           L  F  FL     ++AF+ T FF T +VAN
Sbjct: 410 LKEFVDFLEASQPDYAFILTRFFATGVVAN 439


>U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform b protein.
          Length = 53

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 146 NLKFTIDCTHPAEDSILDV 202
           +LKF ++C +P ED IL +
Sbjct: 20  HLKFNVECKNPVEDGILRI 38


>Z22176-7|CAA80137.1|  910|Caenorhabditis elegans Hypothetical
           protein ZK1098.8 protein.
          Length = 910

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 197 DVGNFEKYLKEHVKVEGKTIT*AITLSS 280
           DV +F KYLKE  +V G+ +   IT+ S
Sbjct: 692 DVSDFRKYLKEIERVGGEHLRHIITVPS 719


>AC024817-10|AAK68523.1|  188|Caenorhabditis elegans Hypothetical
           protein Y54G2A.10a protein.
          Length = 188

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -3

Query: 389 SQSRKLFFLR*RF--VKYFRYLFEKGMSAVIAT 297
           +Q++ L F+  R+  VKY  YLF++G+S+   T
Sbjct: 87  AQNKALTFIDYRYSLVKYVNYLFKQGVSSKFLT 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,497,471
Number of Sequences: 27780
Number of extensions: 153471
Number of successful extensions: 425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)