Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0386.Seq
         (403 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo...    45   2e-05
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id...    45   2e-05
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id...    45   2e-05
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi...    45   2e-05
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    27   3.5  
At2g01710.1 68415.m00099 DNAJ heat shock N-terminal domain-conta...    27   3.5  
At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low...    27   4.7  
At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low...    27   4.7  
At5g56160.1 68418.m07006 SEC14 cytosolic factor family protein /...    27   6.2  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   6.2  

>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
           ribosomal protein L22 (cytosolic), Rattus norvegicus,
           PIR:S52084
          Length = 124

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 149 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGK 250
           + FTIDC+ P +D I+++ + EK+L+E +KV GK
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGK 49



 Score = 34.3 bits (75), Expect = 0.031
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 244 GQNNNLSNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVA 402
           G+   L + V + R+K+K+ +TAD  FS                  DWLRV+A
Sbjct: 48  GKAGALGDSVSITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIA 100


>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 149 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGK 250
           + FTIDC+ P +D I+++ + EK+L+E +KV GK
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGK 49



 Score = 35.1 bits (77), Expect = 0.018
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 244 GQNNNLSNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVA 402
           G+   L + V + R+K+K+ +TAD  FS                  DWLRV+A
Sbjct: 48  GKAGALGDSVTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIA 100


>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 149 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGK 250
           + FTIDC+ P +D I+++ + EK+L+E +KV GK
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGK 49



 Score = 35.1 bits (77), Expect = 0.018
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 244 GQNNNLSNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVA 402
           G+   L + V + R+K+K+ +TAD  FS                  DWLRV+A
Sbjct: 48  GKAGALGDSVTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIA 100


>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
           to ribosomal protein L22 GI:710294 from [Rattus
           norvegicus]
          Length = 127

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +2

Query: 149 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGK 250
           + F IDC+ P +D+IL++   EK+L+E +KV GK
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGK 51


>At3g60970.1 68416.m06823 ABC transporter family protein ABC
           transporter-like proteins
          Length = 1037

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 252 VLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 133
           +L S       YF   PT +IL+ A   QS+++ ++  +L
Sbjct: 560 MLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKL 599


>At2g01710.1 68415.m00099 DNAJ heat shock N-terminal
           domain-containing protein simlar to AHM1 [Triticum
           aestivum] GI:6691467; contains Pfam profile PF00226:
           DnaJ domain
          Length = 311

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 156 NFKLIFRLMPLPRILPPFTPFLPVFWCNWAFLATGF 49
           N +  F    +P+ LPP  P    ++C W F   GF
Sbjct: 192 NCQRAFHAASIPQ-LPPLIPGKDEYYCCWGFFPMGF 226


>At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low
           similarity to DNA polymerase eta [Homo sapiens]
           GI:11463971; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 672

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 258 VIVLPSTLTCSFKYFSKLPTSKILSSAGCVQSIV 157
           ++ +PS  +   +YF   PT    S+ GCVQ  V
Sbjct: 436 IVDIPSGTSSIMRYFQSQPTVPSRSADGCVQGNV 469


>At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low
           similarity to DNA polymerase eta [Homo sapiens]
           GI:11463971; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 588

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 258 VIVLPSTLTCSFKYFSKLPTSKILSSAGCVQSIV 157
           ++ +PS  +   +YF   PT    S+ GCVQ  V
Sbjct: 352 IVDIPSGTSSIMRYFQSQPTVPSRSADGCVQGNV 385


>At5g56160.1 68418.m07006 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           similar to phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus] and SEC14 cytosolic
           factor (SP:P45816) [Candida lipolytica]
          Length = 592

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 173 HPAEDSILDVGNFEKYLKEHVKVEGKTIT*AITLSSPGIRRKSLSPQTFLFQRG 334
           HP +  +++V   E+YLK HV+   +T+   +   S   +R+  +  T L   G
Sbjct: 182 HPGK--LMEVTTIERYLKYHVQEFERTLQEKLPACSVAAKRRVTTTTTILDVEG 233


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 252  VLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 133
            +L S       +F   P  +IL+     QS+V+  + FRL
Sbjct: 1026 MLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRL 1065


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,934,815
Number of Sequences: 28952
Number of extensions: 140613
Number of successful extensions: 363
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)