Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0385.Seq
         (414 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   4.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   4.8  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.3  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 92  QRKATSRQLSRLSSLIP 42
           +R+ TS QLS +SSL P
Sbjct: 471 KRQRTSPQLSPMSSLPP 487


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = +1

Query: 1   QNDAHCVSKIPYAVGISELNRESCREVALR 90
           +N   C+  + +   + ++   SC++ ALR
Sbjct: 118 KNQYQCLCGVGWTGKVCDVEMVSCKDAALR 147


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 171 CGPGSKLFGFPL 136
           CG  + LFGFP+
Sbjct: 246 CGAINMLFGFPI 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,341
Number of Sequences: 336
Number of extensions: 1712
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)