Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0385.Seq
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0726 - 22552005-22552035,22552507-22552598,22552970-225530...    31   0.28 
03_05_0354 + 23411485-23411802,23411886-23412176,23414610-234146...    30   0.84 

>12_02_0726 -
           22552005-22552035,22552507-22552598,22552970-22553094,
           22553221-22553311,22553475-22553755,22554211-22554394,
           22554499-22554583,22554692-22554782,22554909-22555293,
           22555457-22555669,22555873-22556418,22556572-22556788,
           22556907-22557058,22557519-22557663,22557846-22557907,
           22559130-22559291,22559393-22559482,22560055-22560215,
           22560907-22560997,22561125-22561308,22561556-22561737,
           22561857-22562086,22562622-22562685
          Length = 1287

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -1

Query: 315 YRPQLPLEPSHLLKNAYRRRGLLS 244
           +R  LPLEPS LL+ A RRR  LS
Sbjct: 472 HRKPLPLEPSLLLREANRRRAFLS 495


>03_05_0354 +
           23411485-23411802,23411886-23412176,23414610-23414675,
           23415186-23415645,23415963-23416189,23416362-23416649,
           23416955-23416966
          Length = 553

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 55  LNRESCREVALRCKRSLIRCPFNSKV*EGKSKKLTAWSTG 174
           L+R SCR +   CKRSL      +K  +G+ + + A + G
Sbjct: 357 LHRNSCRSIPRACKRSLFSDETEAKENDGEDEDVVAAAEG 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,295,287
Number of Sequences: 37544
Number of extensions: 194100
Number of successful extensions: 340
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)