Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0385.Seq
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               29   2.0  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_31670| Best HMM Match : Cation_efflux (HMM E-Value=0.00032)         27   6.1  

>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 144 IQKAYCLVHRTSSAAATDILALIQLLMEPGYKCPKVSLSFDKHFLGDEMVLMEVEVD 314
           +Q  YC V RT++++      +       G KC  V L  DK   G+ ++L+ +  D
Sbjct: 359 LQVLYCTVIRTTTSSKLPTCLISTKCQRCGLKCVDVILLRDKFVHGNFLILLAIYKD 415


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 49  SELNRESCREVALRCKRSLIRC 114
           SE NRE C ++A  C R L +C
Sbjct: 450 SEKNREECMKLAQECSRDLEKC 471


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 31  PYAVGISELNRESCREVALRCKRSLIRC 114
           PY    ++L +++C  VA RCK  ++ C
Sbjct: 382 PYCKAPNKLRKKNCTLVATRCKEHVLTC 409


>SB_31670| Best HMM Match : Cation_efflux (HMM E-Value=0.00032)
          Length = 299

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 228 PGYKCPKVSLSFDKHFLGDEMVLMEVEVDTSEFSSPLN 341
           PGY+  + SL  ++    DE+ L    ++ S F  PL+
Sbjct: 5   PGYELLRASLDTNEDDSDDELCLFSKRLEVSAFKHPLD 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,845,335
Number of Sequences: 59808
Number of extensions: 218252
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)