Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0385.Seq
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr...    30   0.76 
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr...    30   0.76 
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele...    30   0.76 
AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AL132858-4|CAB60479.2|  338|Caenorhabditis elegans Hypothetical ...    26   9.4  
AL132858-3|CAB60478.2|  391|Caenorhabditis elegans Hypothetical ...    26   9.4  
AF381628-1|AAL12001.1|  372|Caenorhabditis elegans homeodomain p...    26   9.4  
AF381627-1|AAL12000.1|  332|Caenorhabditis elegans homeodomain p...    26   9.4  

>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
           protein F02A9.6 protein.
          Length = 1295

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 1   QNDAHCVSKIPYAVGISELNRESCREVALRCKRSLIRCP 117
           Q  A C  +    V   E N E C    L C+  L RCP
Sbjct: 537 QYPARCADQFANGVCNQECNNEECLYDGLDCQSELFRCP 575


>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
           protein F02A9.6 protein.
          Length = 1295

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 1   QNDAHCVSKIPYAVGISELNRESCREVALRCKRSLIRCP 117
           Q  A C  +    V   E N E C    L C+  L RCP
Sbjct: 537 QYPARCADQFANGVCNQECNNEECLYDGLDCQSELFRCP 575


>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
           C.elegans glp-1 gene,complete cds. ).
          Length = 1295

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 1   QNDAHCVSKIPYAVGISELNRESCREVALRCKRSLIRCP 117
           Q  A C  +    V   E N E C    L C+  L RCP
Sbjct: 537 QYPARCADQFANGVCNQECNNEECLYDGLDCQSELFRCP 575


>AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical
           protein T21E3.1 protein.
          Length = 753

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 19  VSKIPYAVGISELNRESCREVALRCKRS 102
           V+ IP+    S+ N+E CR   + CK S
Sbjct: 419 VNHIPFTHSASDNNQEKCRNPRVHCKDS 446


>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical protein
            F16D3.4 protein.
          Length = 1232

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +1

Query: 7    DAHCVSKIPYAVGISELNRESCREVALRCKRSLIRCPFNSK 129
            D H +    Y V  S       RE A  C +SL++C    +
Sbjct: 956  DEHVIKSAKYMVQQSAERISRTRECACACLKSLVKCEITGR 996


>AL132858-4|CAB60479.2|  338|Caenorhabditis elegans Hypothetical
           protein Y113G7A.6b protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 RGNPKSLLPGPQDL*CSGNRHISSYSASNG-TGL*VPESKP 256
           R   K+L P    + CSGN   +   +SNG TG  V  S P
Sbjct: 202 RQQKKTLAPSNSGVTCSGNNGSTGGGSSNGSTGSEVQPSSP 242


>AL132858-3|CAB60478.2|  391|Caenorhabditis elegans Hypothetical
           protein Y113G7A.6a protein.
          Length = 391

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 RGNPKSLLPGPQDL*CSGNRHISSYSASNG-TGL*VPESKP 256
           R   K+L P    + CSGN   +   +SNG TG  V  S P
Sbjct: 255 RQQKKTLAPSNSGVTCSGNNGSTGGGSSNGSTGSEVQPSSP 295


>AF381628-1|AAL12001.1|  372|Caenorhabditis elegans homeodomain
           protein TTX-1 protein.
          Length = 372

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 RGNPKSLLPGPQDL*CSGNRHISSYSASNG-TGL*VPESKP 256
           R   K+L P    + CSGN   +   +SNG TG  V  S P
Sbjct: 236 RQQKKTLAPSNSGVTCSGNNGSTGGGSSNGSTGSEVQPSSP 276


>AF381627-1|AAL12000.1|  332|Caenorhabditis elegans homeodomain
           protein TTX-1 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 RGNPKSLLPGPQDL*CSGNRHISSYSASNG-TGL*VPESKP 256
           R   K+L P    + CSGN   +   +SNG TG  V  S P
Sbjct: 196 RQQKKTLAPSNSGVTCSGNNGSTGGGSSNGSTGSEVQPSSP 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,812,024
Number of Sequences: 27780
Number of extensions: 164030
Number of successful extensions: 283
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)