Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0385.Seq
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22920.2 68415.m02722 serine carboxypeptidase S10 family prot...    28   2.2  
At2g22920.1 68415.m02721 serine carboxypeptidase S10 family prot...    28   2.2  
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    28   2.2  
At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00...    27   5.0  
At5g47850.1 68418.m05912 protein kinase, putative contains simil...    27   6.6  

>At2g22920.2 68415.m02722 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 435

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +3

Query: 204 ALIQLLMEPGYKCPKVSLSFDKHFLGDEMVLMEVEVD-TSEFS--SPLNSC*IYRTRPRD 374
           AL+Q + +  Y C K  ++   + LG+ +   EV+ +    FS    L S  +Y +  RD
Sbjct: 184 ALVQEISKGNYICCKPPINLQGYILGNPITYFEVDQNYRIPFSHGMALISDELYESIRRD 243

Query: 375 VKAKYF--QRRNVK 410
            K  YF    RN K
Sbjct: 244 CKGNYFNVDPRNTK 257


>At2g22920.1 68415.m02721 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 408

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +3

Query: 204 ALIQLLMEPGYKCPKVSLSFDKHFLGDEMVLMEVEVD-TSEFS--SPLNSC*IYRTRPRD 374
           AL+Q + +  Y C K  ++   + LG+ +   EV+ +    FS    L S  +Y +  RD
Sbjct: 184 ALVQEISKGNYICCKPPINLQGYILGNPITYFEVDQNYRIPFSHGMALISDELYESIRRD 243

Query: 375 VKAKYF--QRRNVK 410
            K  YF    RN K
Sbjct: 244 CKGNYFNVDPRNTK 257


>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 58  NRESCREVALRCKRSLIRCPFNSKV*EGK 144
           NRE+ R+  L+C  SL+  P   K+ EGK
Sbjct: 101 NRENHRKKKLKCLDSLVFPPMTKKIDEGK 129


>At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 389

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 276 KNAYRRRGLLSGTYSPVPLEAE*ELICRLPL 184
           +  YRRR L S   S  PL+   E++ RLP+
Sbjct: 9   RKVYRRRRLQSKPTSSFPLDLASEILLRLPV 39


>At5g47850.1 68418.m05912 protein kinase, putative contains
           similarity to cytokinin-regulated kinase 1 [Nicotiana
           tabacum] gi|10998537|gb|AAG25966; contains protein
           kinase domain, Pfam:PF00069
          Length = 751

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +3

Query: 180 SAAATDILALIQLLMEPG---YKCPKVSLSFDKHFLGDEMVLMEVEVDTSEFSSPLNSC* 350
           S   T    LI  ++ PG    +CP   LS  +   G+E+++ +++ +  EF        
Sbjct: 296 SGVFTPFQGLISQVVMPGPCRRECPYRPLSGSQSLCGNELMICDLKRNDGEFPD------ 349

Query: 351 IYRTRPRDVKAKYFQRRNV 407
              TR ++ K K + RRN+
Sbjct: 350 ---TRAQNSKNKTWSRRNI 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,404,891
Number of Sequences: 28952
Number of extensions: 157450
Number of successful extensions: 269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)