Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0384.Seq
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    25   0.52 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   4.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.4  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   8.4  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 103 IMIALFNQSYIFIVASIFF 159
           I++ +F   +IFIV SIF+
Sbjct: 236 ILLLMFTSHFIFIVVSIFY 254


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +1

Query: 22  YVNKLDSPYPISIW*RDSSGPLWYHNQIMIALFNQSYI 135
           Y  KLD    + +W  D S  L + ++++ +     Y+
Sbjct: 428 YFEKLDVKVTVQLWLGDPSSVLSHGHRVIYSTVGHWYL 465


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +1

Query: 373  YVLCHXCYXGIKYQLLHNYIFLIL 444
            + +CH CY  I+      Y F ++
Sbjct: 1010 FYICHVCYATIQEVRAKIYFFYLV 1033


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +1

Query: 373 YVLCHXCYXGIKYQLLHNYIFLIL 444
           + +CH CY  I+      Y F ++
Sbjct: 291 FYICHVCYATIQEVRAKIYFFYLV 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,215
Number of Sequences: 336
Number of extensions: 2006
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)