Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0384.Seq
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical
           protein M153.3 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/64 (20%), Positives = 22/64 (34%)
 Frame = +1

Query: 205 IIYLYSLDSVLQFTSFKVINVGLCMTLIETKVCXXXXXXXXXXXXXXXXXXTKYSYYVLC 384
           +I L S +  +Q  ++K      CM  +   VC                    +S+   C
Sbjct: 10  LIALVSTEMTMQMIAYKATKTPCCMDTLMPNVCKSLYNRDHEKFTKQCRTNPDFSFIQCC 69

Query: 385 HXCY 396
           H C+
Sbjct: 70  HSCH 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,571,785
Number of Sequences: 27780
Number of extensions: 169654
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)