Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0382.Seq
         (508 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24262 Cluster: Blastopia polyprotein; n=2; Drosophila ...    36   0.53 
UniRef50_UPI0000F21214 Cluster: PREDICTED: similar to LReO_3; n=...    32   8.6  

>UniRef50_Q24262 Cluster: Blastopia polyprotein; n=2; Drosophila
            melanogaster|Rep: Blastopia polyprotein - Drosophila
            melanogaster (Fruit fly)
          Length = 1333

 Score = 35.9 bits (79), Expect = 0.53
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 463  FXGPYHITREMGKGRYEVEKIVRSKDGPVRTTSALDFMKRW 341
            + GPY +T     GRY+V+K   + +GP  T+++ D MK W
Sbjct: 1271 YLGPYEVTGVKDNGRYDVKK-AANVEGPNVTSTSCDNMKLW 1310


>UniRef50_UPI0000F21214 Cluster: PREDICTED: similar to LReO_3; n=6;
           Danio rerio|Rep: PREDICTED: similar to LReO_3 - Danio
           rerio
          Length = 1293

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 472 ILKFXGPYHITREMGKGRYEVEKIVRSKDGPVRTTSALDFMKRW 341
           + K+ GPY ITR+MG   YE+ +  R K    R    ++ +K W
Sbjct: 726 LAKWQGPYEITRKMGPVTYEILQPERKK---TRQIYHVNLLKEW 766


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,168,006
Number of Sequences: 1657284
Number of extensions: 8021947
Number of successful extensions: 14176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14164
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)