Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0382.Seq
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.6  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   8.4  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   8.4  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 287 LFVYFRLI*YLIAHFVIE*VTVNNYH 210
           L  YF  I +++A  V+  V V NYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 287 LFVYFRLI*YLIAHFVIE*VTVNNYH 210
           L  YF  I +++A  V+  V V NYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 287 LFVYFRLI*YLIAHFVIE*VTVNNYH 210
           L  YF  I +++A  V+  V V NYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 278 YFRLI*YLIAHFVIE*VTVNNYH 210
           YF  I +++A  V+  V V NYH
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYH 299


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 278 YFRLI*YLIAHFVIE*VTVNNYH 210
           YF  I +++A  V+  V V NYH
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYH 299


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 44  LNLILPITNNHAITLHTAKKTNSNYSYLVHN 136
           L++ L   N+  + L   K+TN   S L HN
Sbjct: 298 LSMKLSKNNDQCLDLSKTKETNLEKSNLNHN 328


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 44  LNLILPITNNHAITLHTAKKTNSNYSYLVHN 136
           L++ L   N+  + L   K+TN   S L HN
Sbjct: 190 LSMKLSKNNDQCLDLSKTKETNLEKSNLNHN 220


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 317 DQSQIESRPPLH 352
           D+S I   PPLH
Sbjct: 308 DESDINGTPPLH 319


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 23  TLQKYF*LNLILPITNNHAITLHT 94
           T+ K+F + LI P  N +  T+H+
Sbjct: 410 TVWKFFNIFLITPFYNFNENTIHS 433


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,694
Number of Sequences: 336
Number of extensions: 2274
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)