Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0382.Seq
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   4.9  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   6.5  

>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 418 YEVEKIVRSKDGPVRTTSALDFMKRWP*LNLTLV*VF 308
           Y V  IVR KDG     + L  +KR    NL++  VF
Sbjct: 409 YMVGSIVRDKDGVNALITFLHLLKRLQLQNLSITEVF 445


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 44   LNLILPITNNHAITLHTAKKTN 109
            L  IL I NN+A TL  ++KTN
Sbjct: 942  LQAILDIMNNNAETLSPSEKTN 963


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,779
Number of Sequences: 5004
Number of extensions: 34904
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)