Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0382.Seq
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0210 - 20949938-20949976,20950135-20950192,20950447-209505...    27   6.5  
01_06_1276 - 35918954-35919106,35919220-35919325,35919477-359195...    27   8.7  

>02_04_0210 -
           20949938-20949976,20950135-20950192,20950447-20950538,
           20950620-20950982
          Length = 183

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 53  ILPITNNHAITLHTAKKTNSNYSYLVHNTTKTVGLNYQF 169
           +LP +N+ + T     K  + +S L+H   KT+GL + +
Sbjct: 108 VLPCSNSRS-TSGNQSKMETEFSELLHAAEKTIGLYFSY 145


>01_06_1276 -
           35918954-35919106,35919220-35919325,35919477-35919574,
           35919693-35919757,35919877-35920033,35920177-35920268,
           35920379-35920493,35920574-35920622,35920705-35920858,
           35920993-35921019,35921530-35921707,35922326-35922685,
           35922979-35922987,35923170-35923238
          Length = 543

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 375 RTGPSLLLTIFSTSYRPFPISLV 443
           R GPSL   +   SYR FPI LV
Sbjct: 286 RLGPSLYDFLRKNSYRAFPIDLV 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,508,708
Number of Sequences: 37544
Number of extensions: 197716
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)