Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0382.Seq
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)                   28   5.1  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          27   6.7  

>SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)
          Length = 689

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/50 (28%), Positives = 19/50 (38%)
 Frame = +2

Query: 74  HAITLHTAKKTNSNYSYLVHNTTKTVGLNYQFRGKQVTMTQRTAMHDNYS 223
           H I    A   N  Y     NT   +   ++FR  Q  +  R   H+N S
Sbjct: 448 HKINQSKASSQNREYRVQRRNTISRIDPRFKFRAFQALLDARDQWHNNMS 497


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = -1

Query: 202 CSLCHCNLFASKLIV*TYCFCCVMY*VRVITICFFSCVQSYSMIVC 65
           C    C + +   ++    +CC M    ++   FFSC   Y ++ C
Sbjct: 219 CRAVLCRVLSFIALLRRAVYCCAMSCRALLCCAFFSCAVLYRVVSC 264



 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 258 FNCSFCY*ISNCE*LSCIAVLCVIVTC 178
           F+C+  Y + +C  +SC  + C IV+C
Sbjct: 253 FSCAVLYRVVSCCVVSCRVLSCCIVSC 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,151,882
Number of Sequences: 59808
Number of extensions: 262168
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)