Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0382.Seq
(508 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 1.4
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 2.4
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 5.6
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 5.6
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 5.6
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 5.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.3
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 21 7.3
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 21 7.3
DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex det... 21 9.7
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 9.7
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 1.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 287 LFVYFRLI*YLIAHFVIE*VTVNNYH 210
L YF I +++A V+ + + NYH
Sbjct: 294 LGTYFNCIMFMVASSVVSTILILNYH 319
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.6 bits (46), Expect = 2.4
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -1
Query: 208 HCCSLCHC 185
HC +LCHC
Sbjct: 742 HCFALCHC 749
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.4 bits (43), Expect = 5.6
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 62 ITNNHAITLHTAKKTNSNYSYLVHNTTKTVGLNYQFRG 175
+ N TL + S +YL+ N T T + +RG
Sbjct: 217 VWKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKVSWRG 254
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.4 bits (43), Expect = 5.6
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 62 ITNNHAITLHTAKKTNSNYSYLVHNTTKTVGLNYQFRG 175
+ N TL + S +YL+ N T T + +RG
Sbjct: 268 VWKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKVSWRG 305
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.4 bits (43), Expect = 5.6
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 62 ITNNHAITLHTAKKTNSNYSYLVHNTTKTVGLNYQFRG 175
+ N TL + S +YL+ N T T + +RG
Sbjct: 217 VWKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKVSWRG 254
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 5.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 342 HLFMKSNADVVRTGPSLLLTIFSTSYRPFPISLV 443
H K ADV +GP L ++ ++ P S +
Sbjct: 395 HEQQKPVADVAASGPGLAFLVYPSAVLELPGSSI 428
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 278 YFRLI*YLIAHFVIE*VTVNNYH 210
YF I +++A V+ V V N+H
Sbjct: 328 YFNCIMFMVASSVVLTVLVLNFH 350
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 278 YFRLI*YLIAHFVIE*VTVNNYH 210
YF I +++A V+ V V N+H
Sbjct: 328 YFNCIMFMVASSVVLTVLVLNFH 350
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.0 bits (42), Expect = 7.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 308 KHSDQSQIESRPPLH 352
K DQS++ES LH
Sbjct: 188 KERDQSEVESTSSLH 202
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.0 bits (42), Expect = 7.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 308 KHSDQSQIESRPPLH 352
K DQS++ES LH
Sbjct: 188 KERDQSEVESTSSLH 202
>DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 20.6 bits (41), Expect = 9.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 64 YKQSCYNSAH 93
YKQ CYN H
Sbjct: 99 YKQLCYNINH 108
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 20.6 bits (41), Expect = 9.7
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 342 HLFMKSNADVVRTGPSLLLTIFSTSYRPFPISLV 443
H K ADV +GP L ++ ++ P S +
Sbjct: 342 HEQQKPVADVAVSGPGLAFLVYPSAVLELPGSSI 375
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,542
Number of Sequences: 438
Number of extensions: 2562
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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