Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0382.Seq
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel...    28   4.2  
At3g61600.2 68416.m06901 BTB/POZ domain-containing protein conta...    27   7.3  
At3g61600.1 68416.m06900 BTB/POZ domain-containing protein conta...    27   7.3  
At1g26665.2 68414.m03248 expressed protein                             27   9.6  
At1g26665.1 68414.m03247 expressed protein                             27   9.6  

>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
           putative (CNGC17) similar to cyclic nucleotide and
           calmodulin-regulated ion channel cngc5 GI:4581205 from
           [Arabidopsis thaliana]
          Length = 720

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 380 WPIFASDYFFDLISTFPHFPSDVIW 454
           W    SD+  DLI+T P  P  VIW
Sbjct: 172 WRYIKSDFIIDLIATLP-LPQIVIW 195


>At3g61600.2 68416.m06901 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
           containing-protein AtPOB1 (GI:12006855) [Arabidopsis
           thaliana]; similar to actinfilin (GI:21667852) [Rattus
           norvegicus]
          Length = 561

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 279 NKQCSVTMHLNTQTRVRLSQGHLFMKSNADVVRTGPSLL 395
           ++Q  VT+ +N      L +   FM SNA  V T P+LL
Sbjct: 181 SEQRHVTLRINASEEAALMELLNFMYSNAVSVTTAPALL 219


>At3g61600.1 68416.m06900 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
           containing-protein AtPOB1 (GI:12006855) [Arabidopsis
           thaliana]; similar to actinfilin (GI:21667852) [Rattus
           norvegicus]
          Length = 561

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 279 NKQCSVTMHLNTQTRVRLSQGHLFMKSNADVVRTGPSLL 395
           ++Q  VT+ +N      L +   FM SNA  V T P+LL
Sbjct: 181 SEQRHVTLRINASEEAALMELLNFMYSNAVSVTTAPALL 219


>At1g26665.2 68414.m03248 expressed protein
          Length = 189

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 65  TNNHAITLHTAKKTNSNYSYLVHNTTKTVGLNYQFRGKQVTMTQRTAMH 211
           TN+   T+  A  +  N S ++++  KT+G+ +Q      + T  + +H
Sbjct: 22  TNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLH 70


>At1g26665.1 68414.m03247 expressed protein
          Length = 189

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 65  TNNHAITLHTAKKTNSNYSYLVHNTTKTVGLNYQFRGKQVTMTQRTAMH 211
           TN+   T+  A  +  N S ++++  KT+G+ +Q      + T  + +H
Sbjct: 22  TNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLH 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,766,967
Number of Sequences: 28952
Number of extensions: 173304
Number of successful extensions: 269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)