Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0380.Seq
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4L217 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  

>UniRef50_A4L217 Cluster: Putative uncharacterized protein; n=1;
           Gryllus bimaculatus nudivirus|Rep: Putative
           uncharacterized protein - Gryllus bimaculatus nudivirus
          Length = 120

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -1

Query: 189 VNNLSYIFIYVSSYF*SFD-VYINIYLFINV*FEWRCPFFLYKNLYLSRFIY*KIQINLV 13
           +N + YI+IY+  Y   +  +YI IY++I +        ++Y  +Y+  +IY  I I + 
Sbjct: 57  LNAILYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIYIY 116

Query: 12  YK 7
           YK
Sbjct: 117 YK 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,077,918
Number of Sequences: 1657284
Number of extensions: 8308834
Number of successful extensions: 14575
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 13941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14526
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)