Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0380.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 314 FKVLYIAVRATHRNKPKRNAKLSL 385
           + VL    R TH N+P R AKL L
Sbjct: 343 YGVLEEYTRTTHPNEPGRFAKLLL 366


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 395  YFN*VKV*RFSLVCFDASPAPLCIVL*ILHCTCFVIIINIIYVDNPL 255
            Y+N + +  F LVCF        IV  IL  T + +I+  + V   L
Sbjct: 948  YYNIIPILFFMLVCFTCKSNIQLIVAQIL-STGYALIMMAVIVGTAL 993


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 395  YFN*VKV*RFSLVCFDASPAPLCIVL*ILHCTCFVIIINIIYVDNPL 255
            Y+N + +  F LVCF        IV  IL  T + +I+  + V   L
Sbjct: 948  YYNIIPILFFMLVCFTCKSNIQLIVAQIL-STGYALIMMAVIVGTAL 993


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 395  YFN*VKV*RFSLVCFDASPAPLCIVL*ILHCTCFVIIINIIYVDNPL 255
            Y+N + +  F LVCF        IV  IL  T + +I+  + V   L
Sbjct: 948  YYNIIPILFFMLVCFTCKSNIQLIVAQIL-STGYALIMMAVIVGTAL 993


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 395  YFN*VKV*RFSLVCFDASPAPLCIVL*ILHCTCFVIIINIIYVDNPL 255
            Y+N + +  F LVCF        IV  IL  T + +I+  + V   L
Sbjct: 948  YYNIIPILFFMLVCFTCKSNIQLIVAQIL-STGYALIMMAVIVGTAL 993


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,800
Number of Sequences: 336
Number of extensions: 2423
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)