Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0380.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    27   1.8  
SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.1  
SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.1  

>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 314 ILHCTCFVIIINIIYVDNPLISIHLK 237
           +LH TC V+II +I++ +P   +++K
Sbjct: 216 VLHHTCSVLIIFLIWLHHPRTIVYMK 241


>SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 287 IINIIYVDNPLISIHLKNIFF-LSIQFH-LYKN 195
           ++N IY+DNPLIS    N+   L I  H LY +
Sbjct: 4   LMNHIYIDNPLISNSTNNVTHELLIDLHELYND 36


>SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 287 IINIIYVDNPLISIHLKNIFF-LSIQFH-LYKN 195
           ++N IY+DNPLIS    N+   L I  H LY +
Sbjct: 4   LMNHIYIDNPLISNSTNNVTHELLIDLHELYND 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,802
Number of Sequences: 5004
Number of extensions: 37776
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)