Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0379.Seq
         (597 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55GJ4 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  

>UniRef50_Q55GJ4 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 243

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 25/78 (32%), Positives = 39/78 (50%)
 Frame = +1

Query: 133 ESSSNLRLKDSKIKLQFHSIAYSTTNILYALV*QAITTPIHNYK*KYKTNGLQ*FEKLQQ 312
           E ++ + ++ SK +LQFH   Y    +L     +A      N + KYK N     +KL  
Sbjct: 58  EGNNTIEIEQSKKELQFHKEEYENLKVLQR---KANLQTSKNLQEKYKQN-----KKLLL 109

Query: 313 NFFNRSTVKSRFSSNQNT 366
           +   + T +SRF SNQN+
Sbjct: 110 SGSEKITQQSRFYSNQNS 127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,450,262
Number of Sequences: 1657284
Number of extensions: 7826948
Number of successful extensions: 16938
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 16345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16937
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)