Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0379.Seq
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    25   0.37 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   6.0  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   7.9  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory
          receptor candidate 60 protein.
          Length = 364

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +2

Query: 41 LVSNTFALIYYMYTLV 88
          +V +TF +++YMYTL+
Sbjct: 41 IVVSTFNIVFYMYTLI 56


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 94  T*KCPKHTFCSKCESSSNLRLKDSKIKLQFHSIAYSTTNILYALV*QAITTPIHNYK*KY 273
           T + P+H +  K   ++N    +  +K       +S  NIL A   + IT PI+  K K 
Sbjct: 103 TPESPEHYYNQKTLQANNNDASNGNLK-------FSIDNILKADFGRRITDPINIRKCKP 155

Query: 274 KT 279
           KT
Sbjct: 156 KT 157


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 44  VSNTFALIYYMYTLVSVHENVLN 112
           VSN F  +++ Y + ++   VLN
Sbjct: 103 VSNVFDFVHFYYPVATMSFYVLN 125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,412
Number of Sequences: 336
Number of extensions: 2405
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)