Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0379.Seq
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    29   0.52 
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    29   0.52 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   3.6  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   3.6  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   6.3  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   6.3  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    25   8.4  

>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 164 ESFKRKFEELSHLLQNVCLGHFHVQKQEYTYSK*VRRYLKPDYIRVVTKL 15
           E+ KR+F+ + H + N C  H  +Q QE    +    YL+    R +T L
Sbjct: 93  EARKRQFDRVKHSVSNSCKLHLSLQGQEAAQLRSDSLYLEASDKRDLTSL 142


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 185 IRSLIQLXTYYMRLFDKQ*QRLFIITN 265
           IRSL+    Y+ R  DKQ  RLF+I N
Sbjct: 532 IRSLVDAYRYFSRNNDKQLARLFLIKN 558


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 144  EFALKGFKNKTAISFDRLFNYXHTICACLTSNNNA 248
            EF+L+ F+ K     D L  Y  ++C CL ++ +A
Sbjct: 1695 EFSLEVFRFKADDDNDFLPEYIDSLCGCLITSTSA 1729


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 91  RNKSIHIVNKCEGI*NQTISG 29
           +N S+ +VN CEGI NQT  G
Sbjct: 849 KNSSLDMVNACEGI-NQTAIG 868


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 356 LEENLDFTVDRLKKFCCSFSNYCK 285
           L+E LD   +R  +FC S   Y K
Sbjct: 867 LDEELDLMANRKFRFCVSMQRYAK 890


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 52  YLRTYLLYVYSCFCT*KCPKHTFCSKCESSSNLRLKDSKIKLQFHSIAYSTTNIL 216
           ++R Y      CF T   PK  F +K E S N+ +KD K   QF+     +  IL
Sbjct: 215 FVRKYQTSEDQCFETDLFPK--FFTKDEHS-NISIKDQKTSKQFNPETNESVGIL 266


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 35  YSLVSNTFALIYYMYTLVSVHENVLNTRSVVNA 133
           Y++   +F L    + +VS+H  V+NT   VNA
Sbjct: 168 YTMKEISFELEKDGFVVVSIHPGVVNTDMFVNA 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,727
Number of Sequences: 5004
Number of extensions: 37906
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)