Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0379.Seq
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0299 + 15487202-15487227,15487369-15487491,15488277-154883...    29   3.7  

>08_02_0299 +
           15487202-15487227,15487369-15487491,15488277-15488397,
           15488572-15488700,15489954-15490063,15490139-15490322,
           15491155-15491346,15492190-15492411,15492501-15492687,
           15494009-15494103
          Length = 462

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 479 HYVLSNRKCNLNRFDSXQLIT*TKNQLSTINCN 381
           HY+  N K   + FD+ QLI+ T       NCN
Sbjct: 161 HYICPNCKKRYSAFDALQLISYTDEYFHCENCN 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,077,529
Number of Sequences: 37544
Number of extensions: 175042
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)