Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0379.Seq
(597 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50152-2|CAA90514.1| 3358|Drosophila melanogaster trithorax prot... 31 1.2
Z50152-1|CAA90513.1| 3726|Drosophila melanogaster trithorax prot... 31 1.2
Z31725-2|CAA83515.1| 3358|Drosophila melanogaster predicted trit... 31 1.2
Z31725-1|CAA83516.1| 3726|Drosophila melanogaster predicted trit... 31 1.2
M31617-1|AAA29025.1| 3759|Drosophila melanogaster protein ( D.me... 31 1.2
AE014297-1828|AAX52951.1| 3358|Drosophila melanogaster CG8651-PE... 31 1.2
AE014297-1827|AAN13601.1| 3358|Drosophila melanogaster CG8651-PC... 31 1.2
AE014297-1826|AAN13600.1| 3358|Drosophila melanogaster CG8651-PB... 31 1.2
AE014297-1825|AAN13599.1| 3726|Drosophila melanogaster CG8651-PD... 31 1.2
AE014297-1824|AAF55041.2| 3726|Drosophila melanogaster CG8651-PA... 31 1.2
AY119594-1|AAM50248.1| 472|Drosophila melanogaster LD17927p pro... 30 2.1
AE014298-1409|AAF46553.2| 472|Drosophila melanogaster CG2972-PA... 30 2.1
AJ000387-1|CAA04048.1| 551|Drosophila melanogaster Envelope pro... 29 4.8
>Z50152-2|CAA90514.1| 3358|Drosophila melanogaster trithorax protein
trxI protein.
Length = 3358
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 103 CPKHTFCSKCESSSNLRLKDSKIKLQFHSIAYSTTNIL 216
CP+ T C C SS ++K K + +HS T+ L
Sbjct: 973 CPRCTVCYTCNMSSGSKVKCQKCQKNYHSTCLGTSKRL 1010
>Z50152-1|CAA90513.1| 3726|Drosophila melanogaster trithorax protein
trxII protein.
Length = 3726
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 103 CPKHTFCSKCESSSNLRLKDSKIKLQFHSIAYSTTNIL 216
CP+ T C C SS ++K K + +HS T+ L
Sbjct: 1341 CPRCTVCYTCNMSSGSKVKCQKCQKNYHSTCLGTSKRL 1378
>Z31725-2|CAA83515.1| 3358|Drosophila melanogaster predicted trithorax
protein protein.
Length = 3358
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 103 CPKHTFCSKCESSSNLRLKDSKIKLQFHSIAYSTTNIL 216
CP+ T C C SS ++K K + +HS T+ L
Sbjct: 973 CPRCTVCYTCNMSSGSKVKCQKCQKNYHSTCLGTSKRL 1010
>Z31725-1|CAA83516.1| 3726|Drosophila melanogaster predicted trithorax
protein protein.
Length = 3726
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 103 CPKHTFCSKCESSSNLRLKDSKIKLQFHSIAYSTTNIL 216
CP+ T C C SS ++K K + +HS T+ L
Sbjct: 1341 CPRCTVCYTCNMSSGSKVKCQKCQKNYHSTCLGTSKRL 1378
>M31617-1|AAA29025.1| 3759|Drosophila melanogaster protein (
D.melanogaster zinc-binding protein (trithorax) mRNA,
complete cds. ).
Length = 3759
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 103 CPKHTFCSKCESSSNLRLKDSKIKLQFHSIAYSTTNIL 216
CP+ T C C SS ++K K + +HS T+ L
Sbjct: 1341 CPRCTVCYTCNMSSGSKVKCQKCQKNYHSTCLGTSKRL 1378
>AE014297-1828|AAX52951.1| 3358|Drosophila melanogaster CG8651-PE,
isoform E protein.
Length = 3358
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 103 CPKHTFCSKCESSSNLRLKDSKIKLQFHSIAYSTTNIL 216
CP+ T C C SS ++K K + +HS T+ L
Sbjct: 973 CPRCTVCYTCNMSSGSKVKCQKCQKNYHSTCLGTSKRL 1010
>AE014297-1827|AAN13601.1| 3358|Drosophila melanogaster CG8651-PC,
isoform C protein.
Length = 3358
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 103 CPKHTFCSKCESSSNLRLKDSKIKLQFHSIAYSTTNIL 216
CP+ T C C SS ++K K + +HS T+ L
Sbjct: 973 CPRCTVCYTCNMSSGSKVKCQKCQKNYHSTCLGTSKRL 1010
>AE014297-1826|AAN13600.1| 3358|Drosophila melanogaster CG8651-PB,
isoform B protein.
Length = 3358
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 103 CPKHTFCSKCESSSNLRLKDSKIKLQFHSIAYSTTNIL 216
CP+ T C C SS ++K K + +HS T+ L
Sbjct: 973 CPRCTVCYTCNMSSGSKVKCQKCQKNYHSTCLGTSKRL 1010
>AE014297-1825|AAN13599.1| 3726|Drosophila melanogaster CG8651-PD,
isoform D protein.
Length = 3726
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 103 CPKHTFCSKCESSSNLRLKDSKIKLQFHSIAYSTTNIL 216
CP+ T C C SS ++K K + +HS T+ L
Sbjct: 1341 CPRCTVCYTCNMSSGSKVKCQKCQKNYHSTCLGTSKRL 1378
>AE014297-1824|AAF55041.2| 3726|Drosophila melanogaster CG8651-PA,
isoform A protein.
Length = 3726
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 103 CPKHTFCSKCESSSNLRLKDSKIKLQFHSIAYSTTNIL 216
CP+ T C C SS ++K K + +HS T+ L
Sbjct: 1341 CPRCTVCYTCNMSSGSKVKCQKCQKNYHSTCLGTSKRL 1378
>AY119594-1|AAM50248.1| 472|Drosophila melanogaster LD17927p
protein.
Length = 472
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 49 KYLRTYLLYVYSCFCT*KCPKHTFCSKCESSSNLRL 156
K LRTY+L Y+C+ T FC C + + R+
Sbjct: 320 KQLRTYILRCYACYKTTSIMTKVFCPNCGNKTLKRV 355
>AE014298-1409|AAF46553.2| 472|Drosophila melanogaster CG2972-PA
protein.
Length = 472
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 49 KYLRTYLLYVYSCFCT*KCPKHTFCSKCESSSNLRL 156
K LRTY+L Y+C+ T FC C + + R+
Sbjct: 320 KQLRTYILRCYACYKTTSIMTKVFCPNCGNKTLKRV 355
>AJ000387-1|CAA04048.1| 551|Drosophila melanogaster Envelope
protein protein.
Length = 551
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 179 CSFIFESFKRKFEELSHLLQNVCLGHFHVQKQEY 78
C I E F + + +++L N CLGH K Y
Sbjct: 333 CPVIEEQFVCEIDSINNLKNNTCLGHLIQNKTSY 366
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,401,476
Number of Sequences: 53049
Number of extensions: 354095
Number of successful extensions: 1012
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -