Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0379.Seq
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14635-10|AAM81107.1|  552|Caenorhabditis elegans Abnormal dye f...    31   0.62 
U14635-9|AAK84493.1|  574|Caenorhabditis elegans Abnormal dye fi...    31   0.62 

>U14635-10|AAM81107.1|  552|Caenorhabditis elegans Abnormal dye
           filling protein 13,isoform b protein.
          Length = 552

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 100 KCPKHTFCSKCESSSNLRLKDSKIKLQFHS 189
           KCPK   C +   + +LRL D K  L FHS
Sbjct: 94  KCPKTPLCIRLMMNVSLRLNDEKRILTFHS 123


>U14635-9|AAK84493.1|  574|Caenorhabditis elegans Abnormal dye
           filling protein 13,isoform a protein.
          Length = 574

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 100 KCPKHTFCSKCESSSNLRLKDSKIKLQFHS 189
           KCPK   C +   + +LRL D K  L FHS
Sbjct: 116 KCPKTPLCIRLMMNVSLRLNDEKRILTFHS 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,233,515
Number of Sequences: 27780
Number of extensions: 209077
Number of successful extensions: 439
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)