Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0379.Seq
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   4.0  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   4.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   4.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   4.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   4.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.0  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   5.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.2  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 352 KKILTSLWID*KNFVVVSQIIVNR 281
           KK+L S+W D K  V    +  NR
Sbjct: 64  KKVLLSVWWDYKGIVYFELLSPNR 87


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 254 IITNRSTKQTVYNNLRNYNKI 316
           II++ S K T++NN  NY K+
Sbjct: 81  IISSLSNK-TIHNNNNNYKKL 100


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 254 IITNRSTKQTVYNNLRNYNKI 316
           II++ S K T++NN  NY K+
Sbjct: 81  IISSLSNK-TIHNNNNNYKKL 100


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 254 IITNRSTKQTVYNNLRNYNKI 316
           II++ S K T++NN  NY K+
Sbjct: 81  IISSLSNK-TIHNNNNNYKKL 100


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 254 IITNRSTKQTVYNNLRNYNKI 316
           II++ S K T++NN  NY K+
Sbjct: 81  IISSLSNK-TIHNNNNNYKKL 100


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 254 IITNRSTKQTVYNNLRNYNKI 316
           II++ S K T++NN  NY K+
Sbjct: 314 IISSLSNK-TIHNNNNNYKKL 333


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 275 KQTVYNNLRNYNK 313
           K + YNN  NYNK
Sbjct: 90  KYSNYNNYNNYNK 102


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 352 KKILTSLWID*KNFVVVSQIIVNR 281
           KK+L S+W D K  V    +  NR
Sbjct: 186 KKVLLSVWWDYKGIVYFELLPPNR 209


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 116 VCLGHFHVQKQEYTY 72
           +C   FHVQ+  Y Y
Sbjct: 271 ICWAPFHVQRLLYVY 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,893
Number of Sequences: 438
Number of extensions: 2866
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)