Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0379.Seq
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi...    29   2.4  
At4g19160.3 68417.m02827 expressed protein                             28   4.1  
At4g19160.2 68417.m02826 expressed protein                             28   4.1  
At4g19160.1 68417.m02828 expressed protein                             28   4.1  
At4g12910.1 68417.m02019 serine carboxypeptidase S10 family prot...    27   9.5  
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    27   9.5  

>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 768

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 167 FESFKRKFEELSHLLQNVCLGHFHVQKQEYTYS-K*VRRYLKPDYIRVVTKLC 12
           F     +FE LSHL + +  G FH  +  +  S K     L+PDY   +  LC
Sbjct: 244 FSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLC 296


>At4g19160.3 68417.m02827 expressed protein
          Length = 454

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 147 FALKGFKNKTAISFDRLFNYXHTICACLTSNNNAYS*LQIEV 272
           F L+GFK +T+I+ D   +Y H++  C  S     S + IEV
Sbjct: 209 FDLRGFK-RTSITLDPENSYLHSVLNCRCSTAFLISVIYIEV 249


>At4g19160.2 68417.m02826 expressed protein
          Length = 453

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 147 FALKGFKNKTAISFDRLFNYXHTICACLTSNNNAYS*LQIEV 272
           F L+GFK +T+I+ D   +Y H++  C  S     S + IEV
Sbjct: 209 FDLRGFK-RTSITLDPENSYLHSVLNCRCSTAFLISVIYIEV 249


>At4g19160.1 68417.m02828 expressed protein
          Length = 312

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 147 FALKGFKNKTAISFDRLFNYXHTICACLTSNNNAYS*LQIEV 272
           F L+GFK +T+I+ D   +Y H++  C  S     S + IEV
Sbjct: 68  FDLRGFK-RTSITLDPENSYLHSVLNCRCSTAFLISVIYIEV 108


>At4g12910.1 68417.m02019 serine carboxypeptidase S10 family protein
           SERINE CARBOXYPEPTIDASE I PRECURSOR - Hordeum vulgare,
           SWall:CBP1_HORVU
          Length = 484

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 202 LNKRSNEIAVLFLNPLSANSKSSRIYYRTCV*DIFMY-RNKSIHI 71
           L K++N + +L LNP S +  S+ IY  + V   F Y  NKS +I
Sbjct: 107 LPKKNNSLPLLHLNPYSWSKVSNIIYLDSPVGVGFSYSNNKSDYI 151


>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 103 CPKHTFCSKCESS 141
           CPKHT C  CES+
Sbjct: 257 CPKHTKCYSCEST 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,988,525
Number of Sequences: 28952
Number of extensions: 169356
Number of successful extensions: 332
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)