Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0378.Seq
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    30   0.091
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   3.4  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   4.5  
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   6.0  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    24   7.9  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   7.9  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 30.3 bits (65), Expect = 0.091
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 159 HKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILRCL 1
           HK   HQ Y I+RC    +   N   M     DC    HK CY ++  + +C+
Sbjct: 406 HKFLQHQFYQIMRCALCGEFLKNAAGMQCI--DCHYTCHKKCYPKV--VTKCI 454


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +1

Query: 7   AKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVV---AALMDTVPTV 177
           A + E+     + D  PT+   VY      V     Q +  PVH ++   A ++DT  T+
Sbjct: 638 ASETENENTVFIRDNKPTMYTPVYFAEVGKVNCHVYQLSSLPVHSLITGPAVIVDTTQTL 697

Query: 178 VMK 186
           +++
Sbjct: 698 LIE 700


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 100 TLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVT 216
           T+  +Q+  +  HL +A+ +      V+ VY P A+  T
Sbjct: 149 TVFASQSNVEAAHLALASTLAAKAAPVIHVYEPDAIVTT 187



 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 1   QTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVT 102
           Q+  +  HLA+A+ +      V+ VY P A+  T
Sbjct: 154 QSNVEAAHLALASTLAAKAAPVIHVYEPDAIVTT 187


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 105 QCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILRCL 1
           +C+ +   + H HH  W+ I  C     F +L  L
Sbjct: 59  RCFLHNPKISHQHHSFWSLIEGCLEALQFGLLAIL 93


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 4   TAKDPEHLAVAALMDTVP-TVVMEVYHPPAVPVTLVQTQTAQ 126
           TA + + L     +D+ P  V +E Y  P VPV +    TAQ
Sbjct: 6   TAHEFDDLPKIEFIDSCPYQVFLEQYLKPCVPVLIGPKLTAQ 47


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 320 NCRWSIHFHHDSWNCLHES 264
           NC W +     SWN + +S
Sbjct: 194 NCSWVVQLSFSSWNVVGDS 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,086,443
Number of Sequences: 5004
Number of extensions: 20513
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)