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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0378.Seq
         (352 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     35   0.016
SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1)                      33   0.049
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              32   0.15 
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                31   0.26 
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               30   0.61 
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.61 
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_19226| Best HMM Match : I-set (HMM E-Value=0)                       28   1.9  
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)                    28   1.9  
SB_40994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)                      27   4.3  
SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_16535| Best HMM Match : ShTK (HMM E-Value=2.2e-18)                  27   5.7  
SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.5  
SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)                  26   7.5  
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      26   9.9  
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               26   9.9  
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)            26   9.9  

>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 35.1 bits (77), Expect = 0.016
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 183 HHDCWNCIHKCCY-HQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILR 7
           H+ C+   H CCY H  Y    C   +  Y  C +  H+H+ C+   +  CYR  +   R
Sbjct: 13  HNRCYRHHHYCCYCHHRY----CYYRHHHY--CWYRHHYHYPCYRHYYHRCYRHHYCCYR 66


>SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1)
          Length = 424

 Score = 33.5 bits (73), Expect = 0.049
 Identities = 25/78 (32%), Positives = 42/78 (53%)
 Frame = +1

Query: 4   TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVM 183
           + K+  H+ +   +  V T    V H P V VTLV+  +A++ VH+ +   +  V T+  
Sbjct: 321 STKEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVKVTSAKEVVHIPLVVTLVKV-TIAK 377

Query: 184 KVYHPPAVPVTLIRIQTA 237
            V H P V VTL+++ +A
Sbjct: 378 VVVHIPLV-VTLVKVTSA 394



 Score = 31.9 bits (69), Expect = 0.15
 Identities = 25/78 (32%), Positives = 43/78 (55%)
 Frame = +1

Query: 4   TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVM 183
           +AK   H+ +   +  V +  + V H P V VTLV+  +A++ VH+ +   +  V T   
Sbjct: 177 SAKVMVHIPLVVTLVKVTSAEL-VVHIPLV-VTLVEVTSAKEVVHIPLVVTLLKV-TSAE 233

Query: 184 KVYHPPAVPVTLIRIQTA 237
           +V H P V VTL+++ +A
Sbjct: 234 EVVHIPLV-VTLLKVTSA 250



 Score = 31.9 bits (69), Expect = 0.15
 Identities = 22/60 (36%), Positives = 34/60 (56%)
 Frame = +1

Query: 58  TVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQTA 237
           T   EV H P V VTL++  +A++ VH+ +   +  V T    V H P V VTL+++ +A
Sbjct: 212 TSAKEVVHIPLV-VTLLKVTSAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVKVTSA 268



 Score = 29.9 bits (64), Expect = 0.61
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +1

Query: 4   TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHL-VVAALMDTVPTVV 180
           +AK   H+ +   +  V +  + V H P V VTLV+  +A+  VH+ +V  L++     V
Sbjct: 123 SAKVMVHIPLVVTLVKVTSAEL-VVHIPLV-VTLVEVTSAKVVVHIPLVVTLVNVTSAKV 180

Query: 181 MKVYHPPAVPVTLIRIQTA 237
           M   H P V VTL+++ +A
Sbjct: 181 M--VHIPLV-VTLVKVTSA 196



 Score = 29.5 bits (63), Expect = 0.80
 Identities = 25/78 (32%), Positives = 41/78 (52%)
 Frame = +1

Query: 4   TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVM 183
           +A++  H+ +   +  V T    V H P V VTLV+  +A+  VH+ +   +  V T   
Sbjct: 231 SAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVKVTSAELVVHIPLVVTLVEV-TSAK 287

Query: 184 KVYHPPAVPVTLIRIQTA 237
            V H P V VTL+++ +A
Sbjct: 288 VVVHIPLV-VTLVKVTSA 304



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 24/78 (30%), Positives = 41/78 (52%)
 Frame = +1

Query: 4   TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVM 183
           +A++  H+ +   +  V T    V H P V VTLV+  +A+  VH+ +   +  V +  +
Sbjct: 87  SAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVEVTSAKVMVHIPLVVTLVKVTSAEL 144

Query: 184 KVYHPPAVPVTLIRIQTA 237
            V H P V VTL+ + +A
Sbjct: 145 -VVHIPLV-VTLVEVTSA 160



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +1

Query: 73  VYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQTA 237
           V H P V VTL++  +A++ VH+ +   +  V T    V H P V VTL+ + +A
Sbjct: 73  VVHIPLV-VTLLKATSAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVEVTSA 124


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 174 CWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCC 34
           C+   +  CY+  Y+   C     CY+ C    ++HH  + C + CC
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYY-CYCYYYYHH--YYCCYYCC 519


>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 197

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 16/63 (25%), Positives = 23/63 (36%)
 Frame = -2

Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
           C   CRW +    D   C   C +     + R   ++ C   CRW +    D   C   C
Sbjct: 94  CKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTC 149

Query: 36  CYR 28
            +R
Sbjct: 150 RWR 152



 Score = 31.1 bits (67), Expect = 0.26
 Identities = 16/63 (25%), Positives = 23/63 (36%)
 Frame = -2

Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
           C   CRW +    D   C   C +     + R   ++ C   CRW +    D   C   C
Sbjct: 111 CKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTC 166

Query: 36  CYR 28
            +R
Sbjct: 167 RWR 169



 Score = 31.1 bits (67), Expect = 0.26
 Identities = 16/60 (26%), Positives = 22/60 (36%)
 Frame = -2

Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
           C   CRW +    D   C   C +     + R   ++ C   CRW I+   D   C   C
Sbjct: 128 CKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRINRQADIHRCKSTC 183



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/63 (23%), Positives = 22/63 (34%)
 Frame = -2

Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
           C   C W +    D   C   C +     + R   ++ C   CRW +    D   C   C
Sbjct: 77  CKSTCPWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTC 132

Query: 36  CYR 28
            +R
Sbjct: 133 RWR 135



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -2

Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMI 76
           C   CRW +    D   C   C +     I R   +++C   CRW +
Sbjct: 145 CKSTCRWRLDRQADIHTCKSTCRWR----INRQADIHRCKSTCRWQL 187


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = -2

Query: 159 HKCCYHQMY-WILRCLSLNQC---YWNCR-WMIHFHHDCWNC-IHKCCYRQMFWIL 10
           HKCCY ++    L+C    +C   ++N R +    +H  +N   HKCC+ Q+  IL
Sbjct: 180 HKCCYGRIIPKYLKCEMFLRCGKNFYNLRDYRYCGNHYIFNRRFHKCCHNQVIPIL 235


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = -2

Query: 159 HKCCYHQMY-WILRCLSLNQC---YWNCR-WMIHFHHDCWNC-IHKCCYRQMFWIL 10
           HKCCY ++    L+C    +C   ++N R +    +H  +N   HKCC+ Q+  IL
Sbjct: 180 HKCCYGRIIPKYLKCEMFLRCGKNFYNLRDYRYCGNHYIFNRRFHKCCHNQVIPIL 235


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 138 MYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCC 34
           M +   C   N C +NC    H+ +   +C HKCC
Sbjct: 311 MQYYRGCAFANHCDFNC---THYINGSSDCNHKCC 342



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 234 CLNSNQCYWNCRWMIHFHHDCWNCIHKCC 148
           C  +N C +NC    H+ +   +C HKCC
Sbjct: 317 CAFANHCDFNC---THYINGSSDCNHKCC 342


>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1500

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +1

Query: 25   LAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPA 204
            + V+ ++  V  VV+ V     VPV +V        V +VV  ++  V  V + V   PA
Sbjct: 1350 VVVSVVVVVVSVVVVVVVVVVVVPVVVVVVSVVVVVVPVVVVVVVVVVVVVSIVVVSVPA 1409

Query: 205  VPVTLI 222
            V V LI
Sbjct: 1410 VVVVLI 1415


>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +1

Query: 25  LAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPA 204
           + V+ ++  V  VV+ V     VPV +V        V +VV  ++  V  V + V   PA
Sbjct: 365 VVVSVVVVVVSVVVVVVVVVVVVPVVVVVVSVVVVVVPVVVVVVVVVVVVVSIVVVSVPA 424

Query: 205 VPVTLI 222
           V V LI
Sbjct: 425 VVVVLI 430


>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
          Length = 811

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 4   TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAAL 156
           +A  P HL   A+ +  P ++   +HP   P  L+Q  +    VH+VV  L
Sbjct: 606 SAATPSHLGKVAVEEKRPRLLRSEFHPRRSP--LLQLLSNTPDVHVVVVEL 654


>SB_40994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -2

Query: 225 SNQCYWNCRWMIHFHHDCWNCI-HKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNC 49
           S QC  N ++ ++    C N I ++ C  Q+  ++   + +QC  N ++ ++    C N 
Sbjct: 42  SAQCGNNIKYQLYVSAQCGNNIRYQLCMFQLSVVMISSTNSQCGNNIQYQLYVSAQCGNN 101

Query: 48  IHKCCY 31
           I    Y
Sbjct: 102 IRYQLY 107


>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 16  PEHLAVAA--LMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKV 189
           P  LA+ +  +  T   +   + +P A+P+T          ++L  +  + T P++   +
Sbjct: 210 PTALAITSPIIYPTALPITSPIIYPTALPITSPTIYHTALTINL--SNYLPTAPSITSPI 267

Query: 190 YHPPAVPVT 216
            +P A+P+T
Sbjct: 268 IYPTALPIT 276


>SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)
          Length = 338

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 55  PTVVMEVYHPPAVPVTLVQTQTAQDPVH 138
           P V  E++HPP V V     Q    PVH
Sbjct: 5   PIVAPEIHHPPQVVVHTPYEQQQLTPVH 32


>SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 49  TVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMK--VYHPPAVPVTL 219
           TVP VV  V +   +P  +V    +Q P+   V  ++ TVP VV+   V+  P V  T+
Sbjct: 64  TVPNVVFTVPNVYYIPNVVVPNVYSQYPMWYSVPNVVFTVPNVVVTNVVFTVPNVVFTV 122


>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 28  AVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAV 207
           ++  L+  VP++   V H P++  ++ Q  + +  V  V +    T   V  K   P AV
Sbjct: 321 SIKTLVTQVPSIKTSVTHVPSIKTSVTQVPSGKTSVTQVPSG--KTRHAVSFKQDIPDAV 378

Query: 208 PVTL 219
           P+ L
Sbjct: 379 PIPL 382


>SB_16535| Best HMM Match : ShTK (HMM E-Value=2.2e-18)
          Length = 101

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 225 SNQCYWNCRWMIHF-HHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNC 49
           + +C  N +WM H+    C  C+   C        +  +  +C  N R+M   H +C   
Sbjct: 44  AGECQRNTKWMFHYCPVSCGICV---CGDNNPECAKWATQGECSRNARFM---HQNCKRS 97

Query: 48  IHKC 37
            +KC
Sbjct: 98  CNKC 101


>SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +1

Query: 25  LAVAALMDTVPTVVMEVYHPPAV 93
           +++ AL++ + T +++ YHPPA+
Sbjct: 76  ISLEALIECICTALLDSYHPPAL 98


>SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)
          Length = 835

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +1

Query: 1   QTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVV 180
           +T+K   HL  +   DTV      + HPP+V  + ++   +Q  V  +   ++ +V   V
Sbjct: 595 RTSKPTTHLPSSKQHDTVNDDTKPIPHPPSVRKSSLRKSFSQGDVRCLSPEVISSVKKTV 654


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
 Frame = -2

Query: 237 RCLNSNQCYWNCRWMIHFHHDCWNCI--HKCCYHQMYWI----LRCLSLNQC--YWNCRW 82
           RC++ N+C  N  W     H+C N I  ++C     Y +      C  L++C  +  C  
Sbjct: 432 RCVDINECKRNNGWC---EHECINIIGTYRCRCRDGYKLEPNRRTCQDLDECALFSGCEM 488

Query: 81  MIHFHHDCWNC 49
           + H     + C
Sbjct: 489 LCHNTRGSYYC 499


>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
 Frame = +1

Query: 55  PTVVMEVYHPPAVPVTLVQT---QTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVTLIR 225
           PT ++E       P T+ +T   +T ++P  +         PT + +       P T+  
Sbjct: 9   PTTIIETTTTTEEPTTITETTTTKTTEEPTTITETTTTTEEPTTITETTTTTEEPTTITE 68

Query: 226 IQT 234
           I T
Sbjct: 69  ITT 71


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
 Frame = +1

Query: 16  PEHLAVAALMDTVPTVVMEVYHP-----PAVPVTLVQTQTAQDPVHLVVAALMDTVPTVV 180
           P  L++  L+   P  +     P     P +P T    Q+   P+ L+    + T+P   
Sbjct: 606 PLPLSIPLLLQATPPHLQSTAQPRPTTVPPLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665

Query: 181 MKVYHPPAVPV 213
             V HP A P+
Sbjct: 666 PTVRHPQATPL 676


>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
          Length = 1682

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 162  IHKCCYHQMYWILRCLSLNQCYWN 91
            +++C +H  +W L     NQC+++
Sbjct: 1436 LYQCYFHSAFWHLYTRKENQCFFH 1459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,443,480
Number of Sequences: 59808
Number of extensions: 175149
Number of successful extensions: 464
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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