Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0378.Seq
         (352 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    24   1.4  
AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax home...    23   2.5  
AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax home...    23   2.5  
AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding pr...    23   3.3  
AY146759-1|AAO12074.1|  356|Anopheles gambiae odorant-binding pr...    22   5.8  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    22   7.6  

>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 314 RWSIHFHHDSWNCLHESCYRGFPGSY 237
           RW  +    S++  HE  YRG   SY
Sbjct: 297 RWKTNERFRSFHLHHELLYRGLKSSY 322


>AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax
           homeotic protein IVa protein.
          Length = 310

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 296 HHDSWNCLHESCYRGFP 246
           HHD       + YRGFP
Sbjct: 28  HHDQTTAAAAAAYRGFP 44


>AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax
           homeotic protein IIa protein.
          Length = 327

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 296 HHDSWNCLHESCYRGFP 246
           HHD       + YRGFP
Sbjct: 28  HHDQTTAAAAAAYRGFP 44


>AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding
           protein OBPjj5a protein.
          Length = 272

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 320 NCRWSIHFHHDSWNCLHESCYR 255
           NCR +   +H S N    +CY+
Sbjct: 151 NCRTAARRNHSSRNTCRRNCYQ 172



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 93  NCRWMIHFHHDCWNCIHKCCYRQMFW 16
           NCR     +H   N   + CY+Q  +
Sbjct: 151 NCRTAARRNHSSRNTCRRNCYQQCIY 176


>AY146759-1|AAO12074.1|  356|Anopheles gambiae odorant-binding
           protein AgamOBP45 protein.
          Length = 356

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 129 ILRCLSLNQCYWN 91
           +LRC+ LN  +WN
Sbjct: 76  LLRCVGLNLRWWN 88


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 162 IHKCCYHQMYW 130
           +HK  +H MYW
Sbjct: 355 LHKSPHHDMYW 365


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 304,992
Number of Sequences: 2352
Number of extensions: 5873
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 25364985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)