Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0378.Seq
(352 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK098423-1|BAC05305.1| 485|Homo sapiens protein ( Homo sapiens ... 31 0.77
AK055979-1|BAB71063.1| 710|Homo sapiens protein ( Homo sapiens ... 30 1.8
BC030023-1|AAH30023.1| 440|Homo sapiens glycosyltransferase 8 d... 30 2.4
AK098749-1|BAC05403.1| 141|Homo sapiens protein ( Homo sapiens ... 29 5.5
X61498-1|CAA43715.1| 933|Homo sapiens NF-kB subunit protein. 28 9.5
U09609-1|AAA21462.2| 669|Homo sapiens p80HT protein. 28 9.5
S76638-1|AAB21124.1| 900|Homo sapiens p50-NF-kappa B homolog pr... 28 9.5
BT009769-1|AAP88771.1| 899|Homo sapiens nuclear factor of kappa... 28 9.5
BC002844-1|AAH02844.1| 899|Homo sapiens nuclear factor of kappa... 28 9.5
AY865619-1|AAW56071.1| 900|Homo sapiens nuclear factor of kappa... 28 9.5
AL121928-1|CAC08399.1| 900|Homo sapiens nuclear factor of kappa... 28 9.5
>AK098423-1|BAC05305.1| 485|Homo sapiens protein ( Homo sapiens
cDNA FLJ25557 fis, clone JTH02756. ).
Length = 485
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +1
Query: 28 AVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAV 207
+V ++ T+PT++M P V VT++QT A A VP+ V P +
Sbjct: 384 SVMLILRTMPTLMMRTEDRPKVAVTMIQTAAAMGVASGAGATAAAPVPSPVAASTRPRRM 443
Query: 208 PVTL 219
V L
Sbjct: 444 AVKL 447
>AK055979-1|BAB71063.1| 710|Homo sapiens protein ( Homo sapiens
cDNA FLJ31417 fis, clone NT2NE2000327, weakly similar to
GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3). ).
Length = 710
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 55 PTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAA-LMDTVPTVVMKVYHPPAVPVTLIR 225
P V PPAV T+ T+ AQ PV AA D+ + + HPP+ +++ R
Sbjct: 251 PPVTTSNAIPPAVVATVSATR-AQSPVITTTAAHATDSALRPTLSIQHPPSAAISIQR 307
>BC030023-1|AAH30023.1| 440|Homo sapiens glycosyltransferase 8
domain containing 3 protein.
Length = 440
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 123 RCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYR 28
RC + CYWN WM+ NC + +R
Sbjct: 74 RCKDFSLCYWNPYWMLPSDVCGMNCFWEAAFR 105
>AK098749-1|BAC05403.1| 141|Homo sapiens protein ( Homo sapiens
cDNA FLJ25883 fis, clone CBR02735. ).
Length = 141
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 186 FHHDCWNCIHKCCYHQMYWILRCL--SLNQCYW 94
+H C HK +H++ W++ CL +Q YW
Sbjct: 54 YHGVCRELAHKETWHRLSWLVACLWVHYDQGYW 86
>X61498-1|CAA43715.1| 933|Homo sapiens NF-kB subunit protein.
Length = 933
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 16 PEHLAVA-ALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVY 192
P HLA+ + +V ++H + V + Q P+HL V +V + +++V
Sbjct: 490 PLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVG 549
Query: 193 HPPAV 207
PA+
Sbjct: 550 ADPAL 554
>U09609-1|AAA21462.2| 669|Homo sapiens p80HT protein.
Length = 669
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 16 PEHLAVA-ALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVY 192
P HLA+ + +V ++H + V + Q P+HL V +V + +++V
Sbjct: 491 PLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVG 550
Query: 193 HPPAV 207
PA+
Sbjct: 551 ADPAL 555
>S76638-1|AAB21124.1| 900|Homo sapiens p50-NF-kappa B homolog
protein.
Length = 900
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 16 PEHLAVA-ALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVY 192
P HLA+ + +V ++H + V + Q P+HL V +V + +++V
Sbjct: 491 PLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVG 550
Query: 193 HPPAV 207
PA+
Sbjct: 551 ADPAL 555
>BT009769-1|AAP88771.1| 899|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells 2 (p49/p100)
protein.
Length = 899
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 16 PEHLAVA-ALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVY 192
P HLA+ + +V ++H + V + Q P+HL V +V + +++V
Sbjct: 491 PLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVG 550
Query: 193 HPPAV 207
PA+
Sbjct: 551 ADPAL 555
>BC002844-1|AAH02844.1| 899|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells 2 (p49/p100)
protein.
Length = 899
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 16 PEHLAVA-ALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVY 192
P HLA+ + +V ++H + V + Q P+HL V +V + +++V
Sbjct: 491 PLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVG 550
Query: 193 HPPAV 207
PA+
Sbjct: 551 ADPAL 555
>AY865619-1|AAW56071.1| 900|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells 2 (p49/p100)
protein.
Length = 900
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 16 PEHLAVA-ALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVY 192
P HLA+ + +V ++H + V + Q P+HL V +V + +++V
Sbjct: 491 PLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVG 550
Query: 193 HPPAV 207
PA+
Sbjct: 551 ADPAL 555
>AL121928-1|CAC08399.1| 900|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells 2 (p49/p100)
protein.
Length = 900
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 16 PEHLAVA-ALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVY 192
P HLA+ + +V ++H + V + Q P+HL V +V + +++V
Sbjct: 491 PLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVG 550
Query: 193 HPPAV 207
PA+
Sbjct: 551 ADPAL 555
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,647,348
Number of Sequences: 237096
Number of extensions: 795345
Number of successful extensions: 1947
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1924
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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