Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0378.Seq
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28409-4|AAC46590.2| 394|Caenorhabditis elegans Saposin-like pr... 31 0.31
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 29 0.94
AF067611-1|AAC19182.1| 603|Caenorhabditis elegans Hypothetical ... 29 0.94
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 27 2.9
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 27 2.9
Z48809-4|CAB76413.2| 332|Caenorhabditis elegans Hypothetical pr... 27 3.8
AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical... 27 3.8
Z78417-9|CAI70407.1| 700|Caenorhabditis elegans Hypothetical pr... 26 8.7
>U28409-4|AAC46590.2| 394|Caenorhabditis elegans Saposin-like
protein family protein11 protein.
Length = 394
Score = 30.7 bits (66), Expect = 0.31
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 16 PEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQD-PVHLVVAALMDTVPTVVMKVY 192
P+ L + + +P + V P +P+TL + + P L + DT+P +
Sbjct: 183 PKILPTIKIPEIIPLTLPTVKIPDIIPITLPTIKIPEIVPTKLPTVEVPDTIPKTLPTTK 242
Query: 193 HPPAVPVT 216
P VP+T
Sbjct: 243 IPDIVPIT 250
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 29.1 bits (62), Expect = 0.94
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +1
Query: 4 TAKDPEHLAVAALMDTVPTVVMEVYHPPAVP--VTLVQTQTAQDPVHLVVAALMDTVPTV 177
T+++P + VA +M P VV+ P T+ Q PV +V A +
Sbjct: 450 TSEEPNNTTVAQVMPPNPPVVIVDPATSEEPNDTTVAQVMPPNPPVVIVDPATSEEPNDT 509
Query: 178 VMKVYHPPAVPVTLIRIQTA*DP 246
+ PP PV + TA DP
Sbjct: 510 TVAQVMPPNPPVVISGPATAKDP 532
Score = 27.5 bits (58), Expect = 2.9
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Frame = +1
Query: 4 TAKDPEHLAVAALMDTVPTVVMEVYHPPAVP--VTLVQTQTAQDPVHLVVAALMDTVPTV 177
T+++P A +M P VV+ P T+ Q PV +V A +
Sbjct: 372 TSEEPNDTTAAPIMPPNPPVVISGPATSEEPNNTTVAQVMPPNPPVVIVDPATSEEPNDT 431
Query: 178 VMKVYHPPAVPVTLIRIQTA*DPGN 252
+ PP PV + T+ +P N
Sbjct: 432 TVAPVMPPNPPVVISGPATSEEPNN 456
>AF067611-1|AAC19182.1| 603|Caenorhabditis elegans Hypothetical
protein C45G7.4 protein.
Length = 603
Score = 29.1 bits (62), Expect = 0.94
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 183 HHDCWNCIHKCCYHQMYWILRCLSLNQC 100
H+ C +CI C HQ Y++L + C
Sbjct: 45 HNFCESCIFSLCLHQEYYLLDSIKCPTC 72
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +1
Query: 31 VAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDT 165
+A T+ TV M PP P T T T P + L T
Sbjct: 1135 IAYRESTIDTVSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPST 1179
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 27.5 bits (58), Expect = 2.9
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +1
Query: 16 PEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYH 195
P HL+ L TVP+ E Y P V Q ++P HL + +P V ++
Sbjct: 1424 PAHLSPRQLSPTVPS---EGYEIPIERRVTVPVQKPKEPAHLTENTPVPRIPGVTVE--- 1477
Query: 196 PPAVPVTLIR 225
PA T +R
Sbjct: 1478 DPAHQTTSLR 1487
>Z48809-4|CAB76413.2| 332|Caenorhabditis elegans Hypothetical
protein T01E8.7 protein.
Length = 332
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 49 TVPTVVMEV-YHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVTL 219
T+P ++M + + + V+L AQ + L + +L + T+VM + H P TL
Sbjct: 244 TIPVLLMFIPFLFVIIQVSLEYHNQAQTNISLCLLSLHGLISTIVMLIVHKPYRDATL 301
>AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical
protein Y37D8A.26 protein.
Length = 88
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 216 CYWNCRWMIHFHHDCWNC 163
C+W CR + HH C NC
Sbjct: 62 CFW-CRCFMDVHHRCPNC 78
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 102 CYWNCRWMIHFHHDCWNC 49
C+W CR + HH C NC
Sbjct: 62 CFW-CRCFMDVHHRCPNC 78
>Z78417-9|CAI70407.1| 700|Caenorhabditis elegans Hypothetical
protein C35C5.11 protein.
Length = 700
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -2
Query: 150 CYHQMYWILRCLSLNQCYWNCRWMIHFHH 64
C + W+ R SL+ +W R I +H
Sbjct: 502 CLSLIIWVFRWFSLSHHHWTARLFIPSYH 530
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,294,971
Number of Sequences: 27780
Number of extensions: 128777
Number of successful extensions: 406
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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