Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0375.Seq
         (536 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P08574 Cluster: Cytochrome c1 heme protein, mitochondri...    50   3e-05
UniRef50_UPI0000DB762B Cluster: PREDICTED: similar to CG4769-PA;...    41   0.021
UniRef50_Q9VAM8 Cluster: CG14508-PA; n=4; Bilateria|Rep: CG14508...    39   0.084
UniRef50_A1YBQ4 Cluster: AmbC; n=8; Sorangium cellulosum|Rep: Am...    36   0.78 
UniRef50_Q18853 Cluster: Putative uncharacterized protein cyc-1;...    33   3.1  
UniRef50_A5FKF3 Cluster: Major facilitator superfamily MFS_1; n=...    33   5.5  
UniRef50_A0P0C4 Cluster: Cation-transporting ATPase; n=1; Stappi...    33   5.5  
UniRef50_Q550T0 Cluster: TRAM, LAG1 and CLN8 homology domain-con...    33   5.5  
UniRef50_A5DKG8 Cluster: Putative uncharacterized protein; n=1; ...    32   9.6  
UniRef50_P25076 Cluster: Cytochrome c1 heme protein, mitochondri...    32   9.6  

>UniRef50_P08574 Cluster: Cytochrome c1 heme protein, mitochondrial
           precursor; n=45; Eukaryota|Rep: Cytochrome c1 heme
           protein, mitochondrial precursor - Homo sapiens (Human)
          Length = 325

 Score = 50.0 bits (114), Expect = 3e-05
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = -3

Query: 471 QMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
           +M +K + M ++L  +VY  KRHKWS LKSRKLAY+P
Sbjct: 287 RMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRP 323


>UniRef50_UPI0000DB762B Cluster: PREDICTED: similar to CG4769-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to CG4769-PA
           - Apis mellifera
          Length = 351

 Score = 40.7 bits (91), Expect = 0.021
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = -3

Query: 468 MTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVS 355
           MT+K IG+F +L    +Y  R  WS ++SR++AY P S
Sbjct: 228 MTLKCIGIFLILMVSTFYIYRRTWSHVRSRRIAYVPNS 265


>UniRef50_Q9VAM8 Cluster: CG14508-PA; n=4; Bilateria|Rep: CG14508-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 344

 Score = 38.7 bits (86), Expect = 0.084
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -3

Query: 468 MTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
           + IK   + + L  + YY KR KWSTLKSRK+ + P
Sbjct: 273 LLIKVTLISTFLIGISYYIKRFKWSTLKSRKIFFIP 308


>UniRef50_A1YBQ4 Cluster: AmbC; n=8; Sorangium cellulosum|Rep: AmbC -
            Polyangium cellulosum (Sorangium cellulosum)
          Length = 3655

 Score = 35.5 bits (78), Expect = 0.78
 Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +1

Query: 286  PIEKKNLSKTFVLLLVSCWRLFLRNGLVGE-LSRLERGPLVPLVVVDNGGKHGEHADSFD 462
            P E + +     LLL   W    R GL    L     G  V LV  D GG+  EH + FD
Sbjct: 1893 PREAERMDPQQRLLLECAWEALERAGLAPHSLEASATGVFVGLVYSDYGGRLLEHLEVFD 1952

Query: 463  GHLXDGR-PISGS 498
            G++  G  P  GS
Sbjct: 1953 GYVATGSFPSVGS 1965


>UniRef50_Q18853 Cluster: Putative uncharacterized protein cyc-1;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein cyc-1 - Caenorhabditis elegans
          Length = 285

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 462 IKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVSKK*TP 340
           +K   +   +A V+ Y KRH WS  KS+K  +K V  +  P
Sbjct: 242 LKIAALIPFVAVVLIYGKRHIWSFTKSQKFLFKTVKGREPP 282


>UniRef50_A5FKF3 Cluster: Major facilitator superfamily MFS_1; n=2;
           Bacteroidetes|Rep: Major facilitator superfamily MFS_1 -
           Flavobacterium johnsoniae UW101
          Length = 413

 Score = 32.7 bits (71), Expect = 5.5
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 525 MLXLS*MVLRTRNWTTVGQ--MTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAY 367
           +L LS ++L   N  TV    MT+  IGM    +++  Y + H   +++SR ++Y
Sbjct: 292 LLGLSVIILAVSNSITVALICMTLSGIGMMGQTSSINIYIQTHSIVSMRSRSISY 346


>UniRef50_A0P0C4 Cluster: Cation-transporting ATPase; n=1; Stappia
           aggregata IAM 12614|Rep: Cation-transporting ATPase -
           Stappia aggregata IAM 12614
          Length = 903

 Score = 32.7 bits (71), Expect = 5.5
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 340 WRLFLRNGLVGELSRLERGPLVPLVVVDNGGKHGEHADSFDGHLXDGRPI 489
           WR+  RN LV ELS +E      L++ D  G   E+  S   +L DG  +
Sbjct: 309 WRMAARNALVTELSAVETLGATTLILTDKTGTLTENRMSAARYLLDGTSV 358


>UniRef50_Q550T0 Cluster: TRAM, LAG1 and CLN8 homology
           domain-containing protein; n=2; Dictyostelium
           discoideum|Rep: TRAM, LAG1 and CLN8 homology
           domain-containing protein - Dictyostelium discoideum AX4
          Length = 258

 Score = 32.7 bits (71), Expect = 5.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 270 LTCYCAYRKKKFV*NICFATCKLLAFI 350
           L+CYC Y KK +V N   +TC L  FI
Sbjct: 67  LSCYCIYNKKSWVTNEMTSTCALSDFI 93


>UniRef50_A5DKG8 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 599

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 239 TIACLLCYTGWLAVTLLPCVV 177
           TIACLLC+TGW  V+ L  ++
Sbjct: 483 TIACLLCFTGWRLVSKLGSIL 503


>UniRef50_P25076 Cluster: Cytochrome c1 heme protein, mitochondrial
           precursor; n=12; Viridiplantae|Rep: Cytochrome c1 heme
           protein, mitochondrial precursor - Solanum tuberosum
           (Potato)
          Length = 320

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 468 MTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVS 355
           M  K I + S+      YY+R +WS LKSRKL    V+
Sbjct: 283 MGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 320


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,099,903
Number of Sequences: 1657284
Number of extensions: 8884151
Number of successful extensions: 19743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19736
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)