Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0375.Seq
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    35   0.009
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   7.2  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.5  

>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 34.7 bits (76), Expect = 0.009
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = -3

Query: 471 QMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYK 364
           +M  + I + ++L A+  +YKR KW+ +K+RK+ Y+
Sbjct: 268 KMGFQVITVLTILTALSMWYKRFKWTPIKNRKIFYQ 303



 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 532 AKDVATFLNGAQNPKLDDRR 473
           AKDV  FL+ A  P+LD R+
Sbjct: 248 AKDVVNFLHWASEPELDIRK 267


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 51  HGKSQAQLPTDHLTLQFDCATASQWQNAINII 146
           H   +A L  DHL ++ D   AS++ NAI+ I
Sbjct: 270 HKLQKAFLSPDHLIVEEDFYNASKYLNAISDI 301


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 301 NLSKTFVLLLVSCWRLFLRNGLVGELS 381
           +L K     ++SCWR++L  G++  ++
Sbjct: 696 SLMKYLTSAVISCWRIYLLIGILAAIT 722


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 490 KLDDRRXDDHQSYRHVLHA 434
           ++D +  D HQ Y+ V+HA
Sbjct: 78  EIDAKTFDPHQKYKKVIHA 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,372
Number of Sequences: 5004
Number of extensions: 39286
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)