Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0375.Seq
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103...    34   0.083
01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305     33   0.14 
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625     28   4.1  
05_01_0556 - 4876849-4877328                                           27   9.5  

>05_03_0389 -
           13409848-13409964,13410049-13410114,13410209-13410325,
           13410822-13410893,13410979-13411258,13411528-13411730,
           13412230-13412316,13412705-13412758,13413042-13413221,
           13414402-13414576,13414628-13414918,13414923-13415344
          Length = 687

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 468 MTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVS 355
           M +K I + S+      YY+R +WS LKSRKL    V+
Sbjct: 650 MGVKWIFLLSLALLQAAYYRRMRWSVLKSRKLVLDVVN 687


>01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305
          Length = 82

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 468 MTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVS 355
           M +K I + S+      YY+R KWS  KSRKL    V+
Sbjct: 45  MGVKWIFLLSLALLQAAYYRRMKWSVYKSRKLVLDVVN 82


>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
          Length = 768

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 364 LVGELSRLERGPLVPLVVVDNGGKHGEHADSFDGH 468
           +  E +R +  P V  VVV+  G  GE AD   GH
Sbjct: 15  IADEAARRDGSPPVDAVVVEGAGTSGEDADWPSGH 49


>05_01_0556 - 4876849-4877328
          Length = 159

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +1

Query: 421 DNGGKHGEHADSFDGHLXDGRPIS--GSEHHSRK 516
           D+GG HG   D   G    G P+S   +EH  ++
Sbjct: 22  DDGGGHGPDGDGHGGRHDPGNPVSKQAAEHSGQR 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,055,267
Number of Sequences: 37544
Number of extensions: 242990
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)