Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0375.Seq
         (536 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094773-1|AAM11126.1|  307|Drosophila melanogaster GM14501p pro...    52   5e-07
AE014296-947|AAF50785.1|  307|Drosophila melanogaster CG4769-PA ...    52   5e-07
AY089328-1|AAL90066.1|  344|Drosophila melanogaster AT13706p pro...    39   0.005
AE014297-4352|AAF56876.1|  344|Drosophila melanogaster CG14508-P...    39   0.005
BT015247-1|AAT94476.1| 1037|Drosophila melanogaster LP19917p pro...    30   2.3  
AE014134-482|AAF51201.1| 1475|Drosophila melanogaster CG3131-PA ...    30   2.3  

>AY094773-1|AAM11126.1|  307|Drosophila melanogaster GM14501p
           protein.
          Length = 307

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = -3

Query: 471 QMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVSK 352
           Q+ IK IG+   L  + YY KRHKWS+LKSRK+ + P  K
Sbjct: 268 QLLIKVIGILGFLTVISYYIKRHKWSSLKSRKIVFVPKEK 307



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 535 LAKDVATFLNGAQNPKLDDRR 473
           LAKDVATFL     P+ DDR+
Sbjct: 247 LAKDVATFLKWTSEPEHDDRK 267


>AE014296-947|AAF50785.1|  307|Drosophila melanogaster CG4769-PA
           protein.
          Length = 307

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = -3

Query: 471 QMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVSK 352
           Q+ IK IG+   L  + YY KRHKWS+LKSRK+ + P  K
Sbjct: 268 QLLIKVIGILGFLTVISYYIKRHKWSSLKSRKIVFVPKEK 307



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 535 LAKDVATFLNGAQNPKLDDRR 473
           LAKDVATFL     P+ DDR+
Sbjct: 247 LAKDVATFLKWTSEPEHDDRK 267


>AY089328-1|AAL90066.1|  344|Drosophila melanogaster AT13706p
           protein.
          Length = 344

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -3

Query: 468 MTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
           + IK   + + L  + YY KR KWSTLKSRK+ + P
Sbjct: 273 LLIKVTLISTFLIGISYYIKRFKWSTLKSRKIFFIP 308


>AE014297-4352|AAF56876.1|  344|Drosophila melanogaster CG14508-PA
           protein.
          Length = 344

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -3

Query: 468 MTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
           + IK   + + L  + YY KR KWSTLKSRK+ + P
Sbjct: 273 LLIKVTLISTFLIGISYYIKRFKWSTLKSRKIFFIP 308


>BT015247-1|AAT94476.1| 1037|Drosophila melanogaster LP19917p protein.
          Length = 1037

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 137  KHNYIR*YGFASTGPRMVTKSQQATPCNKVN 229
            KH+Y+   G  S GPR +TKS  +  C++VN
Sbjct: 992  KHSYVSKIGVFSCGPRPLTKSVMSA-CDEVN 1021


>AE014134-482|AAF51201.1| 1475|Drosophila melanogaster CG3131-PA
            protein.
          Length = 1475

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 137  KHNYIR*YGFASTGPRMVTKSQQATPCNKVN 229
            KH+Y+   G  S GPR +TKS  +  C++VN
Sbjct: 1430 KHSYVSKIGVFSCGPRPLTKSVMSA-CDEVN 1459


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,994,149
Number of Sequences: 53049
Number of extensions: 423724
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2032955904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)